1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacacaaaaaaatcactcttttcctctctttttcaccgagagcttgtttccttctccccagGGACGTGATGGAATCCAGTGCCGACATCCTCTTTGCAAACAGCGACGAGGCCCGAGCTCTGTGTGGATTTGGATCGAGCACGAGTCCGAGCTTTGCCGCG
species | Selaginella moellendorffii |
transcript | EFJ23286 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCACTGCCAGCGACGCCTCGTGCATATCTCGTCATCGCGATCAATTCTG GGACGTGATGGAATCCAGTGCCGACATCCTCTTTGCAAACAGCGACGAGGCEST: gi|169050656|gb|FE457826.1|FE457826
genomic: CTCACTGCCAGCGACGCCTCGTGCATATCTCGTCATCGCGATCAATTCTGgtacacaaaa ... ttctccccagGGACGTGATGGAATCCAGTGCCGACATCCTCTTTGCAAACAGCGACGAGGC
EST: CTCACTGCCAGCGACGCCTCGTGCATATCTCGTCATCGCGATCAATTCTG GGACGTGATGGAATCCAGTGCCGACATCCTCTTTGCAAACAGCGACGAGGCEST: gi|169050655|gb|FE457825.1|FE457825
genomic: CTCACTGCCAGCGACGCCTCGTGCATATCTCGTCATCGCGATCAATTCTGgtacacaaaa ... ttctccccagGGACGTGATGGAATCCAGTGCCGACATCCTCTTTGCAAACAGCGACGAGGC
EST: CTCACTGCCAGCGACGCCTCGTGCATATCTCGTCATCGCGATCAATTCTG GGACGTGATGGAATCCAGTGCCGACATCCTCTTTGCAAACAGCGACGAGGCEST: gi|169051308|gb|FE459192.1|FE459192
genomic: CTCACTGCCAGCGACGCCTCGTGCATATCTCGTCATCGCGATCAATTCTGgtacacaaaa ... ttctccccagGGACGTGATGGAATCCAGTGCCGACATCCTCTTTGCAAACAGCGACGAGGC
EST: CTCACTGCCAGCGACGCCTCGTGCATATCTCGTCATCGCGATCAATTCTG GGACGTGATGGAATCCAGTGCCGACATCCTCTTTGCAAACAGCGACGAGGC
genomic: CTCACTGCCAGCGACGCCTCGTGCATATCTCGTCATCGCGATCAATTCTGgtacacaaaa ... ttctccccagGGACGTGATGGAATCCAGTGCCGACATCCTCTTTGCAAACAGCGACGAGGC
aaaaaatcactcttttcctctctttttcaccgagagcttgtttccttctccccagGGACGTGATGGAATCCAGTGCCGACATCCTCTTTGCAAACAGCGACGAGGCCCGAGCTCTGTGTGGATTTGGATCGAGCACGAGTCCGAGCTTTGCCGCG
cttgtttccttctccc CT-rich tract
tcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacaaaaaaatcactcttttcctctctttttcaccgagagcttgtttccttctccccagGGACGTGATGGAATCCAGTGCCGACATCCTCTTTGCAAACAGCGACGAGGCCCGAGCTCTGTGTGGATTTGGATCGAGCACGAGTCCGAGCTTTGCCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT