1 5' 3' | 2 5' 3' | 3 5' 3' |
...acactgagtgagaaaacgaaaagaccttggagcggcactttgtgggaaagcaaacgtcgctttattccaagaaatgctcactgtaagaaagaaaacgtagGCCCAGCAGACACTTCCGCAAGGTGGTCTCGGGTGATTACGAGGTGGAGCTCCGGTTCTCTACAAC
species | Selaginella moellendorffii |
transcript | EFJ23204 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gaaagcaaacgtcgctttattccaagaaatgctcactgtaagaaagaaaacgtagGCCCAGCAGACACTTCCGCAAGGTGGTCTCGGGTGATTACGAGGTGGAGCTCCGGTTCTCTACAAC
tgctcac putative branch site (score: 2)
aaagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acactgagtgagaaaacgaaaagaccttggagcggcactttgtgggaaagcaaacgtcgctttattccaagaaatgctcactgtaagaaagaaaacgtagGCCCAGCAGACACTTCCGCAAGGTGGTCTCGGGTGATTACGAGGTGGAGCTCCGGTTCTCTACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - -gagaaaa
- - - - - - - - -gaaaagac
- - - - - - - - - - - - - - - agcggca
- - - - - - - - - - - - - - - - - - - - - - - -aagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaagaaa