Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacttgttgcttcttccgggttgatcaaaaccagatttttccttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAGAAAGCCGGCGAGGACTTCAAGTGGGCTCTGATGAAAATCGATGAAGCTC

Basic information

species Selaginella moellendorffii
transcript EFJ23200
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169071939|gb|FE477654.1|FE477654
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169106077|gb|FE507921.1|FE507921
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169058826|gb|FE467659.1|FE467659
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169105884|gb|FE505193.1|FE505193
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169065768|gb|FE476217.1|FE476217
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169070509|gb|FE479786.1|FE479786
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169108721|gb|FE510819.1|FE510819
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169057499|gb|FE464451.1|FE464451
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169105883|gb|FE505192.1|FE505192
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169059827|gb|FE467839.1|FE467839
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169023869|gb|FE436407.1|FE436407
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169059828|gb|FE467840.1|FE467840
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169092876|gb|FE493740.1|FE493740
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169106899|gb|FE508808.1|FE508808
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169050053|gb|FE460121.1|FE460121
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169061374|gb|FE470942.1|FE470942
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169035870|gb|FE443261.1|FE443261
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169049313|gb|FE459784.1|FE459784
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169074407|gb|FE484316.1|FE484316
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169071643|gb|FE477085.1|FE477085
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169109427|gb|FE514112.1|FE514112
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169072614|gb|FE481579.1|FE481579
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169035871|gb|FE443262.1|FE443262
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169062976|gb|FE472934.1|FE472934
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169051585|gb|FE458468.1|FE458468
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169065163|gb|FE473987.1|FE473987
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169067034|gb|FE475998.1|FE475998
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169062967|gb|FE472418.1|FE472418
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169067033|gb|FE475997.1|FE475997
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169058825|gb|FE467658.1|FE467658
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169106898|gb|FE508807.1|FE508807
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169051584|gb|FE458467.1|FE458467
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169074406|gb|FE484315.1|FE484315
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169065769|gb|FE476218.1|FE476218
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169034698|gb|FE443419.1|FE443419
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169038701|gb|FE447455.1|FE447455
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169062962|gb|FE472933.1|FE472933
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169092877|gb|FE493741.1|FE493741
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169050054|gb|FE460122.1|FE460122
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169062966|gb|FE472417.1|FE472417
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169101478|gb|FE501451.1|FE501451
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169051227|gb|FE458734.1|FE458734
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169034697|gb|FE443418.1|FE443418
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169071938|gb|FE477653.1|FE477653
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169109428|gb|FE514113.1|FE514113
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169045750|gb|FE453881.1|FE453881
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169071642|gb|FE477084.1|FE477084
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169115558|gb|FE518067.1|FE518067
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169108722|gb|FE510820.1|FE510820
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169023870|gb|FE436408.1|FE436408
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169063326|gb|FE472160.1|FE472160
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169101477|gb|FE501450.1|FE501450
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
EST: gi|169038700|gb|FE447454.1|FE447454
EST:     CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAG                         CTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG
genomic: CATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 91

CTACATTGACATTGTGTGGCCCGGTTCTCACAAGCTCCTCCCGGAAGATCCATACGAAAAGGCTGTGGCTCGCTTCTGGGCAGATTTTGGTGACAAAAAGgtaaacttgt ... ttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAGAAAGCCGGCGAGGACTTCAAGTGGGCTCTGATGAAAATCGATGAAGCTC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaacttgttgcttcttccgggttgatcaaaaccagatttttccttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAGAAAGCCGGCGAGGACTTCAAGTGGGCTCTGATGAAAATCGATGAAGCTC
                                          tccttac  putative branch site (score: 91)
                                      tttttccttacc  CT-rich tract
                                   agattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaacttgttgcttcttccgggttgatcaaaaccagatttttccttaccaacagCTCTATGACGCCGGGAACCGACTCATACGAGCTATGGGGGAGGAGCACAAGAAAGCCGGCGAGGACTTCAAGTGGGCTCTGATGAAAATCGATGAAGCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC