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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttggtttttggttttccttatagatctttgctaaactctattacacagATACTACTGTATTTGTCCAATGTCCTCGAAGGAAAGCCAGACGACTCAAAATCTAAATTATTGACCGCTCTAGAAACTTTCACCGCTTATAATGCTCGAG

Basic information

species Selaginella moellendorffii
transcript EFJ23179
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169105909|gb|FE505205.1|FE505205
EST:     TGGTGAAGCACAATCCAGATTCTTTATCAGCAGAGTTTCAGAACGAGCTT                         ATACTACTGTATTTGTCCAATGTCCTCGAAGGAAAGCCAGACGACTCAAAA
genomic: TGGTGAAGCACAATCCAGATTCTTTATCAGCAGAGTTTCAGAACGAGCTTgtaagtttgg ... tattacacagATACTACTGTATTTGTCCAATGTCCTCGAAGGAAAGCCAGACGACTCAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtttggtttttggttttccttatagatctttgctaaactctattacacagATACTACTGTATTTGTCCAATGTCCTCGAAGGAAAGCCAGACGACTCAAAATCTAAATTATTGACCGCTCTAGAAACTTTCACCGCTTATAATGCTCGAG
                                   tgctaaa  putative branch site (score: 2)
                                          ctctatt  CT-rich tract
                        ttatagat  TA-rich tract