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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCCTGGTCATCCAGCTCTAGATGAAGATGGTCGGAACGCATTGCGCAGGCTTTTGACTGCATACGCACGACATAATCCTGATGTTGGATACTGTCAGgttggttgaagattagtagccttaagtgttaaaagatcgtcttgaatacttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ22778
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22778 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 5
TTTTCCTGGTCATCCAGCTCTAGATGAAGATGGTCGGAACGCATTGCGCAGGCTTTTGACTGCATACGCACGACATAATCCTGATGTTGGATACTGTCAGgt--tggttgaagattagtagccttaagtgt----taaaagatcgtcttgaatacttgcag--------------------------------------------------------
 |||||||||||||| ||||||||||| |||||| | || ||  | ||  |  |  | ||||| || ||  | |||||||||  ||| ||||||||||||||  | |||    |  | || | | |  | |    ||  |  ||   || | |||    |                                                         
ATTTCCTGGTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGgtatttgttcttaaccaatatcatgatctttattgtagtacctctattttagtaccgagacatagtaaattaacattaatatcaagttaatatcttttgtcaatatactttctgcag