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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttctttttgtatacacctcagcttccatgctattatcattgtttttctagGCGCGTCTCAAACCGAATACACTCTAAGTGCTGATGATTGTGAAACCTTTATCGCAATACAATGTTGTCCTATGGATGATCGAGGACGGAAG

Basic information

species Selaginella moellendorffii
transcript EFJ22707
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169092676|gb|FE493670.1|FE493670
EST:     TGGATACGGTATTACCAAGATGGTGCCGAGGATATTGATG                         GCGCGTCTCAAACCGAATACACTCTAAGTGCTGATGATTGTGAAACCTTTA
genomic: TGGATACGGTATTACAAAGATGGTGCCGAGGACATTGATGgtacgttctt ... gtttttctagGCGCGTCTCAAACCGAATACACTCTAAGTGCTGATGATTGTGAAACCTTTA
EST: gi|169092974|gb|FE495268.1|FE495268
EST:     TGGATACGGTATTACCAAGATGGTGCCGAGGATATTGATG                         GCGCGTCTCAAACCGAATACACTCTAAGTGCTGATGATTGTGAAACCTTTA
genomic: TGGATACGGTATTACAAAGATGGTGCCGAGGACATTGATGgtacgttctt ... gtttttctagGCGCGTCTCAAACCGAATACACTCTAAGTGCTGATGATTGTGAAACCTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacgttctttttgtatacacctcagcttccatgctattatcattgtttttctagGCGCGTCTCAAACCGAATACACTCTAAGTGCTGATGATTGTGAAACCTTTATCGCAATACAATGTTGTCCTATGGATGATCGAGGACGGAAG
                                           ttgtttttct  CT-rich tract
                                   tattatcattgttttt  TA-rich tract