1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtttcttagtttttgcttggaatgcttgggactaatgctagcagctgcttagCTCCAAGGGAGCTTCTCATCGGAAGCTAGAAGCTCTCAAGAAGGTGAGGCGATTTCTTTCGTGCAGCTCTTTGCCGCCAGTGAGCGTTGCTGTGGAAGCT
species | Selaginella moellendorffii |
transcript | EFJ22694 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATGACGTGAAATCGGCAGTGGCGGAGCTAGTCAGCGCTAGCCAAGACAT CTCCAAGGGAGCTTCTCATCGGAAGCTAGAAGCTCTCAAGAAGGTGAGGCGEST: gi|169104835|gb|FE505404.1|FE505404
genomic: AATGACGTGAAATCGGCAGTGGCGGAGCTAGTCAGCGCTAGCCAAGACATgtaagtttct ... agctgcttagCTCCAAGGGAGCTTCTCATCGGAAGCTAGAAGCTCTCAAGAAGGTGAGGCG
EST: AATGACGTGAAATCGGCAGTGGCGGAGCTAGTCAGCGCTAGCCAAGACAT CTCCAAGGGAGCTTCTAATCGGAAGCTAGAAGCTCTTAAGAAGGTGAGGCGEST: gi|169116224|gb|FE517171.1|FE517171
genomic: AATGACGTGAAATCGGCAGTGGCGGAGCTAGTCAGCGCTAGCCAAGACATgtaagtttct ... agctgcttagCTCCAAGGGAGCTTCTCATCGGAAGCTAGAAGCTCTCAAGAAGGTGAGGCG
EST: AATGACGTGAAATCGGCAGTGGCGGAGCTAGTCAGCGCTAGCCAAGACAT CTCCAAGGGAGCTTCTCATCGGAAGCTAGAAGCTCTCAAGAAGGTGAGGCG
genomic: AATGACGTGAAATCGGCAGTGGCGGAGCTAGTCAGCGCTAGCCAAGACATgtaagtttct ... agctgcttagCTCCAAGGGAGCTTCTCATCGGAAGCTAGAAGCTCTCAAGAAGGTGAGGCG
taagtttcttagtttttgcttggaatgcttgggactaatgctagcagctgcttagCTCCAAGGGAGCTTCTCATCGGAAGCTAGAAGCTCTCAAGAAGGTGAGGCGATTTCTTTCGTGCAGCTCTTTGCCGCCAGTGAGCGTTGCTGTGGAAGCT
gactaat putative branch site (score: 4)
ttagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttcttagtttttgcttggaatgcttgggactaatgctagcagctgcttagCTCCAAGGGAGCTTCTCATCGGAAGCTAGAAGCTCTCAAGAAGGTGAGGCGATTTCTTTCGTGCAGCTCTTTGCCGCCAGTGAGCGTTGCTGTGGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG