1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAGCAAATTCAACGCTGTGATCCTCAAGCGGCTCTTCATGAGCAAAACCAACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAGgtgagctttccgattgctcgcatcacttcttgattggtttttctttttccttctgacacag
species | Selaginella moellendorffii |
transcript | EFJ22685 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAG TCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTCEST: gi|169099479|gb|FE500510.1|FE500510
genomic: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAGgtgagctttc ... tctgacacagTCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTC
EST: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAG TCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTCEST: gi|70671039|gb|DN839616.1|DN839616
genomic: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAGgtgagctttc ... tctgacacagTCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTC
EST: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAG TCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTCEST: gi|169076248|gb|FE485694.1|FE485694
genomic: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAGgtgagctttc ... tctgacacagTCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTC
EST: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAG TCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTCEST: gi|169099478|gb|FE500509.1|FE500509
genomic: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAGgtgagctttc ... tctgacacagTCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTC
EST: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAG TCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTCEST: gi|169035084|gb|FE445920.1|FE445920
genomic: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAGgtgagctttc ... tctgacacagTCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTC
EST: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAG TCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTC
genomic: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAGgtgagctttc ... tctgacacagTCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCAAATTCAACGCTGTGATCCTCAAGCGGCTCTTCATGAGCAAAACCAACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAGgtgagctttccgattgctcgcatcacttcttgattggtttttctttttccttctgacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG