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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTGCCAATCCAAGCCCGGCCTGCCGCTGCGATCGCGAGGAGCACGCCATTGCCGTCAGCGGCGCGATGCAATGCGGCAGCGAGCGCATTTGTTCCAGgtaaattcgatccgagacgattggatgaaacgaaggattcgaattggattgtcatggcgcag

Basic information

species Selaginella moellendorffii
transcript EFJ22679
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|70671066|gb|DN839643.1|DN839643
EST:     ATTGCCGTCAGCGGCGCGATGCAATGCGGCAGCGAGCGCATTTGTTCCAG                         GAGCTTCGTTGACGTCTCGTGAGGTTTTTGGCGATGGCGTGCTGCGGCTGA
genomic: ATTGCCGTCAGCGGCGCGATGCAATGCGGCAGCGAGCGCATTTGTTCCAGgtaaattcga ... catggcgcagGAGCTTCGTTGACGTCTCGTGAGGTTTTTGGCGATGGCGTGCTGCGGCTGA
EST: gi|169075681|gb|FE481755.1|FE481755
EST:     ATTGCCGTCAGCGGCGCGATGCAATGCGGCAGCGAGCGCATTTGTTCCAG                         GAGCTTCGTTGACGTCTCGTGAGGTTTTTGGCGATGGCGTGCTGCGGCTGA
genomic: ATTGCCGTCAGCGGCGCGATGCAATGCGGCAGCGAGCGCATTTGTTCCAGgtaaattcga ... catggcgcagGAGCTTCGTTGACGTCTCGTGAGGTTTTTGGCGATGGCGTGCTGCGGCTGA
EST: gi|169038279|gb|FE443952.1|FE443952
EST:     ATTGCCGTCAGCGGCGCGATGCAATGCGGCAGCGAGCGCATTTGTTCCAG                         GAGCTTCGTTGACGTCTCGTGAGGTTTTTGGCGATGGCGTGCTGCGGCTGA
genomic: ATTGCCGTCAGCGGCGCGATGCAATGCGGCAGCGAGCGCATTTGTTCCAGgtaaattcga ... catggcgcagGAGCTTCGTTGACGTCTCGTGAGGTTTTTGGCGATGGCGTGCTGCGGCTGA
EST: gi|70670481|gb|DN839058.1|DN839058
EST:     ATTGCCGTCAGCGGCGCGATGCAATGCGCCAGCGAGCGCATTTGTTCCAG                         GAGCTTCGTTGACGTCTCGTGAGGTTTTCGGCGATGGCGTGCTGCGGCTGA
genomic: ATTGCCGTCAGCGGCGCGATGCAATGCGGCAGCGAGCGCATTTGTTCCAGgtaaattcga ... catggcgcagGAGCTTCGTTGACGTCTCGTGAGGTTTTTGGCGATGGCGTGCTGCGGCTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 34

GTGTTGCCAATCCAAGCCCGGCCTGCCGCTGCGATCGCGAGGAGCACGCCATTGCCGTCAGCGGCGCGATGCAATGCGGCAGCGAGCGCATTTGTTCCAGgtaaattcga ... catggcgcagGAGCTTCGTTGACGTCTCGTGAGGTTTTTGGCGATGGCGTGCTGCGGCTGAGAGCGCGGAGCGGCAATTCGATGCTAGCAACGAGACGGACTGCCAGAGT




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