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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATCGGGCAAGCATATGAAGACATGCAGACTCAAAACCAAAGGCTTTTGCAGCAGATATCCGAAAGGGATGATTACAATACAAAGgtttcttagattcacgtgagctagaaatgagactaattttccgcttacag

Basic information

species Selaginella moellendorffii
transcript EFJ22678
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22678 (Selaginella moellendorffii), 5'ss of exon 14
lower sequence: GLYMA01G13430.1 (Glycine max), 5'ss of exon 10
ACTATCGGGCAAGCATATGAAGACATGCAGACTCAAAACCAAAGGCTTTTGCAGCAGATATCCGAAAGGGATGATTACAATACAAAGgtttcttagattcacgtgagctagaaatg---agactaattttccgcttacag-----------------------------------------------
| ||| || ||||||||||| |||||||| ||||||||||||   || |||||||||||  | ||||| |||||||| ||||  |||||   ||   || |  |  | |  |  |    ||  || |||     | |                                                  
AGTATTGGACAAGCATATGACGACATGCAAACTCAAAACCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTATAATATTAAGgtaatttgtcttgaaattggttgcacctttatagtttactttgaaagtgatgataatttatttctacagtacatataaacaagaccctttgtatttctca

upper sequence: EFJ22678 (Selaginella moellendorffii), 5'ss of exon 14
lower sequence: GLYMA11G26740.1 (Glycine max), 5'ss of exon 3
ACTATCGGGCAAGCATATGAAGACATGCAGACTCAAAACCAAAGGCTTTTGCAGCAGATATCCGAAAGGGATGATTACAATACAAAGgtttcttagattcacgtgagctagaaatgagactaattttccgcttacag----------------------------------------------------
| ||| || || |||||||| |||||||| |||||||| |||   || |||||||||||  | ||||| |||||||||||||  |||||   ||   || |  |  | |  |  |     || |||| |  ||| ||                                                    
AGTATTGGACAGGCATATGACGACATGCAAACTCAAAATCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTACAATATTAAGgtaatttgtcttgaaattggttgcaccttta--tagttttacttttaaagttatgatgatttatttctatggtctttgccatctacatataaaacaagactc

upper sequence: EFJ22678 (Selaginella moellendorffii), 5'ss of exon 14
lower sequence: Vv06s0004g00950.t01 (Vitis vinifera), 5'ss of exon 15
ACTATCGGGCAAGCATATGAAGACATGCAGACTCAAAACCAAAGGCTTTTGCAGCAGATATCCGAAAGGGATGATTACAATACAAAGgtttct----tagattcacg---tgagctagaaatgagactaattttccgcttacag---------------------------------------------------------------
||||| || |||||||||||||| |||||||| |||||||||   ||  |||||||| |  | || ||||||||||||||||  ||||| | |    ||  ||   |   |||     ||||     | ||||    |||  |                                                                
ACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTGCAGCAGGTGACTGAGAGGGATGATTACAATATCAAGgtctgtggtgtaattttctgcgttgattgctaaattgttatgatttctttcttttatcaatttccatgttggatgcttagctagttttgccatggttgtgttgttggtgtcatgctgcag

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTATCGGGCAAGCATATGAAGACATGCAGACTCAAAACCAAAGGCTTTTGCAGCAGATATCCGAAAGGGATGATTACAATACAAAGgtttcttagattcacgtgagctagaaatgagactaattttccgcttacag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT