Sequence
atgc intronic sequence ATGC exonic sequence...tttgataagctttcatgctgtcgtccatagtttgattctttttagtttttgataaaattggcttttactaaattctttgattgtctcgtgattgtctcagCCTCCATGTTGCCAACTCGAGCGGGATTTACATCCATGATATCACCCTGTATGGAGATTTTAACACGCCCAACAACGATGGCATCGACATAGATGGTTCC
Basic information
species | Selaginella moellendorffii |
transcript | EFJ22654 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ22654 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os09g31270.1 (Oryza sativa), 3'ss of exon 1
tttgataagctttcatgctgtcgtccatagtttgattctttttagtttttgataaaattggcttttactaaattctttgattgt-----ctcgtgattgtctcagCCTCCATGTTGCCAACTCGAGCGGGATTTACATCCATGATATCACCCTGTATGGAGATTTTAACACGCCCAACAACGATGGCATCGACATAGATGGTTCC
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---ccctagatatcatctgattagcaaaaattacacagcatttgtgtagtgatgaggt--attcagggaaagttaacaggctatatgcacttgcattccctgcagTCTGCATATTGTCAGGTGTGACAATACAATGATCCACAATGTGTCGATATATGGGGATTTTGACACTCCCAACAACGACGGCATCGACATTGAGGATTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttgataaaattggcttttactaaattctttgattgtctcgtgattgtctcagCCTCCATGTTGCCAACTCGAGCGGGATTTACATCCATGATATCACCCTGTATGGAGATTTTAACACGCCCAACAACGATGGCATCGACATAGATGGTTCC
ttgtctc CT-rich tract
ttttactaaattcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttgataagctttcatgctgtcgtccatagtttgattctttttagtttttgataaaattggcttttactaaattctttgattgtctcgtgattgtctcagCCTCCATGTTGCCAACTCGAGCGGGATTTACATCCATGATATCACCCTGTATGGAGATTTTAACACGCCCAACAACGATGGCATCGACATAGATGGTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - -ctttcat
- - - - - - - - - - - - - - - - - attcttt
- - - - - - - - - - - - - - - - - -ttctttt
- - - - - - - - - - - - - - - - - - - - - - gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtctc