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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgttactgtcaacaattatttagcatatgcttatgcttatagttcagATGACTGTAACGTGGACTAGTGGTTATCGAACCAGCGAAGCGATTCCGTTCGTTTCGTATGAGGTTGCGGATCACATTGCACTTCACAAGATTCCGTCAT

Basic information

species Selaginella moellendorffii
transcript EFJ22584
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169023370|gb|FE430046.1|FE430046
EST:     TAAAGATGCCTTTATACCCAAGACTAGCTCAAGGACAATCTTGGAATGAG                         ATGACTGTAACGTGGACTAGTGGTTATCGAACCAGCGAAGCGATTCCGTTC
genomic: TAAAGATGCCTTTATACCCAAGACTAGCTCAAGGACAATCTTGGAATGAGgtattgttac ... tatagttcagATGACTGTAACGTGGACTAGTGGTTATCGAACCAGCGAAGCGATTCCGTTC
EST: gi|169021953|gb|FE430912.1|FE430912
EST:     TAAAGATGCCTTTATACCCAAGACTAGCTCAAGGACAATCTTGGAATGAG                         ATGACTGTAACGTGGACTAGTGGTTATCGAACCAGCGAAGCGATTCCGTTC
genomic: TAAAGATGCCTTTATACCCAAGACTAGCTCAAGGACAATCTTGGAATGAGgtattgttac ... tatagttcagATGACTGTAACGTGGACTAGTGGTTATCGAACCAGCGAAGCGATTCCGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattgttactgtcaacaattatttagcatatgcttatgcttatagttcagATGACTGTAACGTGGACTAGTGGTTATCGAACCAGCGAAGCGATTCCGTTCGTTTCGTATGAGGTTGCGGATCACATTGCACTTCACAAGATTCCGTCAT
                            aattatttagcatat  TA-rich tract