Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttttatcttgttgctttcagcgagtttgtgatgtttttcttgcagGATCTCATGAACTTGAATTTCATCCAAGAAAAGAGCGAAGCAGATTTTCGATATGGATTGGTGCGAATTCGAGAAAATGCAGAGTCCATCGCGTTTTATG

Basic information

species Selaginella moellendorffii
transcript EFJ22548
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ12952 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: LOC_Os01g11946.1 (Oryza sativa), 3'ss of exon 4
-----------------------------------gtatgg----ttttatcttgttgctttcagcgagtttgtgatgtttttctt----gcagGATCTCATGAACTTGAATTTCATCCAAGAAAAGAGCGAAGCAGATTTTCGATATGGATTGGTGCGAATTCGAGAAAATGCAGAGTCCATCGCGTTTTATG
                                   | || |    |  | | |  ||  ||  | | | ||  ||    || |  |     ||| || |  | |||||||| ||||| ||||||||||  |||||||||||||| |||||| | || ||| || |||||||||| || || || || |||||||
gtaagttgcttatcaacattatttatctccaacttgcattgaacatactctttctttctttaaaactaattgctggctattcttgtacggacagAATTTGGTCAACTTGAACTTCATGCAAGAAAAGAAAGAAGCAGATTTTCGTTATGGACTTGTCCGAGTTAGAGAAAATGCTGAATCAATTGCTTTTTATG

upper sequence: EFJ12952 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: Vv19s0085g01190.t01 (Vitis vinifera), 3'ss of exon 4
------------------------------------------------------gtatggttttatcttgttgctttcagcgagtttgtgatgtttttcttg------cagGATCTCATGAACTTGAATTTCATCCAAGAAAAGAGCGAAGCAGATTTTCGATATGGATTGGTGCGAATTCGAGAAAATGCAGAGTCCATCGCGTTTTATG
                                                      | |       || || || ||  |||  | |  |  || |||    ||      ||||  ||  | ||| | |||||| | ||||| ||||  |||||||||||||| |||||| | ||||| ||||| |||||||| || || || ||||| ||| 
gtaattttcctacctttttgaaatcattattttgaatttgcagtgaaacattatgcaatagaacatattcttactc-cagtcaataggaaatatttcatctgtgatttcagGGACTGGTAAACCTAAATTTCTTGCAAGAGAAGAAAGAAGCAGATTTTCGTTATGGACTTGTGCGTATTCGTGAAAATGCTGAATCAATTGCGTTCTATA

upper sequence: EFJ12952 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: PP1S218_122V6.1 (Physcomitrella patens), 3'ss of exon 4
--------------------------------------------------------------------------------------------------------------------------------gtatggttttatcttgtt----gctttcagcgagtt-tgtgatgtttttcttgcagGATCTCATGAACTTGAATTTCATCCAAGAAAAGAGCGAAGCAGATTTTCGATATGGATTGGTGCGAATTCGAGAAAATGCAGAGTCCATCGCGTTTTATG
                                                                                                                                |||  |||||    || |    |  | | |  |||| |  ||  ||||| |||||| || |  | |   | ||||| || | ||||||||| ||||| ||||||||||||||||| || ||  | || || |||||||| || ||||| || || |
gtgagcgctgatgctctgaagattatctttctgcatttttgtgtgcacgtgctctctcttcaaaaattaatgattagtttcttatgctcactttccatagccttcattgcgtaattaactttaccttcgtaatgttttgaagtgcttcaagtatgctgatagttgtaagagattttttttgcagAATTTGGTAAGTCTTAATTTTATGCGAGAAAAGAGGGAAGCTGATTTTCGATATGGATTAGTCCGCGTACGGGAGAATGCAGAATCAATCGCTTTCTACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatggttttatcttgttgctttcagcgagtttgtgatgtttttcttgcagGATCTCATGAACTTGAATTTCATCCAAGAAAAGAGCGAAGCAGATTTTCGATATGGATTGGTGCGAATTCGAGAAAATGCAGAGTCCATCGCGTTTTATG
                                            tgtttttctt  CT-rich tract
          ttttatctt  TA-rich tract