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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA

Basic information

species Selaginella moellendorffii
transcript EFJ22540
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os09g32260.2 (Oryza sativa), 3'ss of exon 2
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttgga-atcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                                      ||   ||||| | |     ||   |||     || ||    ||||  | ||  |  |  |   |   |||   || |  || || |||||| ||       | || ||               ||||||| ||||| |||||||||||||||||||||||||||||| | ||||| || |||||||| || ||  |||| || || || |||||  | || || ||
---------------------------------------------------------------------aggttctgaatgttcaaatatgtggtcacattttttcac---acttacacattcacaatctatat---gttctatgtattaattttctctaataaa------tgtgctc---------------cagAGAAGGCAAAAATGGGAGAGAAGGAATGGTACTTCTTTAGCCTAAGGGATCGAAAGTACCCAACTGGCGTGCGCACAAACCGAGCAACTAATGCTGGTTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os03g42630.1 (Oryza sativa), 3'ss of exon 1
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                                                      || ||||| |||  || | |||      || |  ||  ||  ||  | || |||      ||   || | |   ||  | |    ||| |   | |  | |    ||||  || |||| |||||| |||||||| ||||||||||| ||| || | ||||| ||||||||||||||||| || || || || || || ||  |||||||
----------------------------------------------------------------------------------atatcactgcatgcata-cactacaaa-----tgcacacgtacaaatgaat-gaattgatcaatcgttcttacacatgaa--cgcaatgttgatggatgtgatat----gcagGCAAGGCAAGCATGGGGGAGAAGGAGTGGTACTTCTTCAGCATGCGCGACCGCAAGTACCCGACGGGGATCCGCACCAACCGCGCCACGGACTCCGGCTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os02g36880.1 (Oryza sativa), 3'ss of exon 2
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcact-ctctcga-cgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                    |      |  |   ||  || ||||||| |  |||   |  | ||   |  ||   || | | |   ||  | ||  | | | | | | |    |   ||  ||    |  | |    |  ||  | |        | |||   |   | |   |  |||| ||  || |  ||||| |||||||| |||||||||||  || ||| |||||||||||||||||||||| || | |||||  |||| || ||| |||| ||
-----------------------------------gtaagccaagcttagctagctactctcgatctctctcaagtctcaaacagtcgc---gcgtacgtatgatcgctagtgagtagtactaggtttgatttttcatgtgattt--atgggggtgatcagaga--------tgtgtgtgtacgtgtgcgcatgcagCGAGGGCGACGATGGGGGAGAAGGAGTGGTACTTCTTCTGCGTGAAGGACCGGAAGTACCCGACGGGGCTGAGGACGAACAGGGCGACGGAGTCCGGGTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os12g41680.1 (Oryza sativa), 3'ss of exon 1
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcct-ggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                                                                |  |  |   ||     ||   |||  ||| ||      | |||  | ||     | |  |      || | |  |||  | | |||| |||      ||||   ||     |||| |  ||||| ||||||||||| ||| |||||||||| || ||| ||||||||  ||||||||| || || || |   | || ||
------------------------------------------------------------------------------------------------aatgtgtgataactttattattatctttcaattaaagataattgttttggttattaattgttggtgtatttataattttatatgttttttttatgataagAGGTGGCGTCGGTGGGCGGAAAGGAGTGGTACTTCTTCAGCCTGAGGGACCGAAAATACGCGACGGGGCAGCGTACGAACCGAGCCACGGTTTCGGGGTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os04g43560.1 (Oryza sativa), 3'ss of exon 1
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                                                              |||||  || | |||  |     | |||    |        |  | |     |     ||    ||     ||    ||| | || |||     |  |||||    || ||  ||   | ||  || ||||||||||| ||||| |||||||| |||||| ||||||||  ||| ||||| || || ||| || | |||||
----------------------------------------------------------------------------------------------tcatg-tatgcaaagccagactaattcgcatgcactatctcaacttctcaagcccctctctaacaacgcattcgttcttgctattctttgcgcacatgcagACGTGGCGAAGCTGACGGCGAGCGAGTGGTACTTCTTCAGCTTCAGGGACCGAAAGTACGCGACGGGGTCGCGCACGAACCGCGCCACCAAGACAGGCTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os04g38720.1 (Oryza sativa), 3'ss of exon 2
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcat-tgcattcatggcattccaaggaacttggaatcgat---cacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                           |   |   ||    ||  | ||   | | | |||| ||           | |||||    || |||    || ||| ||   |||  | | | |  |  ||   || |||| |   | | |    |    ||   |||||     || || ||||| |||||||| |||||||||||  || | | |||| ||||||||||||||||| || | |||||  |||| || ||| |||| ||
----------------------------------------------------------gtaagcaacctctc-ctctacttaattacctctgcaatctgcatgcagtgatgaactgatgattgatatatacatggatca--ttggattggctagctagct---aacatctgttgat-gctgcgatggaattattggcagCTCTGGCGAAGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCTCAAGGACAGGAAGTACCCGACGGGGCTGAGGACGAACAGGGCGACGGAGTCCGGGTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM5G898290_T02 (Zea mays), 3'ss of exon 2
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattc-atggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                           |   | | |       ||| |     |   |   | | ||   |||  |   | || ||  | | |  | | | ||          |||  |  ||            |   |  || |  | |  | |    ||||     || |  ||||| |||||||| |||||||||||  || | | |||||| ||||||||||||||| || | ||||| ||||| |||||| |||| ||
----------------------------------------------------------gtaagcatgcacatatatgagtgctgagtgctaactgctatcagatttaattaagctagg--ttggtttcctcgctcctccattaatgactgacgtcacacgtgctcgccatgtacgtacggtgtggtgtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACCGCAAGTACCCGACGGGGCTGAGGACGAACCGGGCCACCGAGTCCGGATA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G009892_T01 (Zea mays), 3'ss of exon 2
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                                                                                  |     ||  | |   ||   || | | | ||  |  ||| |  ||  |        |  |   |  ||   |  || ||| |   || |  ||||| |||||||| |||||||||||  || | | |||||| ||||||||||||||| || | || || ||||| || |||||||| ||
-----------------------------------------------------------------------------------------------------------------gtaagcacgcacgcgccggcatagctac-tagatcatgttc-taaaaggaagggagtatgatatgtgatttggttgcgccagCGCTGGCGAGGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCTCAAGGACCGCAAGTACCCGACGGGGCTGAGGACCAACCGGGCCACGGAGGCCGGGTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA12G26190.1 (Glycine max), 3'ss of exon 1
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                  | ||  |  |     |    | |  |    |    |||   |  | |          || || |  |   | | |   |   |   |  || ||  |  |||| |||| | |||| |||      || | |||   || |  || |     ||||||| |  |||| |    ||||||||||||||| ||||| ||||||||||||||||||| |||| |  | ||||| |||||||| || ||| | || || ||| | || || || || || ||
----------------gtaactaattacaacaacaaaaccaaaaccctcatcgactaattttaagactaaaacaatgtatata-tatgtagaaaataactctcacttagtaaaat--aatc-atca-tggggttgaga-attaggccaaaa---ctttgtaatttctaactttgttatcgtttcatgt--ggcagAGAAAGCAAAGATGGGTGAGAAGGAATGGTACTTCTATAGCCTTCGTGACCGAAAGTACCCAACTGGGTTACGCACAAATAGAGCCACTGAAGCTGGTTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA06G35660.1 (Glycine max), 3'ss of exon 1
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                                                              | ||  | |||            ||||  |    |||       |||| | ||    ||  |   ||  | | |  |||| | || |||| |    ||||||||||||||| ||||| ||||||||||||||||||| |||| |  | ||||| |||||||| || ||  | || || ||| |||| ||||| || || ||
----------------------------------------------------------------------------------------------taataactttctcttcgtaagataatcattgtggtggagaattatgccagaacattgttattgctaac-tttgttatttgctattgtttcatatgtggcagAGAAAGCAAAGATGGGTGAGAAGGAATGGTACTTCTATAGCCTTCGTGACCGAAAGTACCCAACTGGATTACGCACCAATAGGGCCACCGAAGCTGGTTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA13G34950.1 (Glycine max), 3'ss of exon 1
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                               |    ||      ||||  | | || |||     |  ||   |||   ||||     |   |||  |  ||||       |||||  || |     | |     ||  |  ||||     |||| |  ||  |  |   | || |  ||| | |||   |||||||||||| || ||||||||||| || ||||||||||| |||||  | ||| |||||||||| || ||| |  | || ||| |||| || || || || ||
------------------------------gtaaaattaagcactttcaacgccctttctttttttcttt---cttatctttggctattaatatttctttcatt-------acttgctatag--tggtagtacaaagaagtttggatt---ttccacctaacgtaacctttgtggttgtttgttttt---ggcagAGAAAGCTAAGATGGGAGAGAAAGAGTGGTACTTCTTCAGCTTACGTGACAGGAAGTACCCAACTGGGTTAAGAACCAATAGGGCTACTGAAGCTGGTTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA12G35530.1 (Glycine max), 3'ss of exon 1
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                       ||  |   | |  ||| || ||    |||||    | |   ||  |   || |||||||||| ||| |  |    ||| |   |  |        |||||   |||||      ||||     | ||  |||||||| ||           |||||||||||| || ||||||||||| || ||||||||||| |||||  | ||| | |||||||| || ||| |  | || ||| |||| || || || || ||
--------------------------------------gtaaaaacacttaacaccctttct---ttctttctttagctattaatatttt-cattcatggctttctatag----tggcagtaaaaa--------gagtt---tggactttccacctc-----acctaacctttgttttt-----------ggcagAGAAAGCTAAGATGGGAGAGAAAGAGTGGTACTTCTTCAGCTTACGTGACAGAAAGTACCCAACTGGGTTAAGAACCAATAGGGCTACTGAAGCTGGGTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT5G53950.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                                                                          ||| || |   || | |  ||||   |  ||||   | |     |    |    |||||| | || |     | || |||       || || ||| || ||||||||||| |||||||||||||||||| |  | ||||||||||| ||||||||  || | || ||  | ||||| ||||| || ||
--------------------------------------------------------------------------------------------------------gtaagaaaatacaaaacta--acttacttgtagttcttttgtaattaaggtttctgaaatctttactct--caatgttactt-------agGGAGAGCTAAGATGGGAGAGAAAGAATGGTACTTCTTTAGCCTCCGTGACCGGAAGTATCCGACGGGACTGAGAACTAACAGAGCAACTGAGGCTGGTTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT2G24430.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                                                ||| |   || | | |      ||   |   | |||  |   |  |  |  |   | | |||      || ||  ||  ||| | |||  ||| |  | ||         |  |||||| || || |||||||  || ||||||||||| |||||| |  ||||||||||||||||||||||  || | |||||| |||| ||  |  | || ||
-------------------------------------------------------------------------------attgtta-gttacgtgctaaaattttggaaatatttgataaaaaaaaagtcagctaaatcgcc------aagttattcacaaagtttctgatttataatgtt---------gatagAGAAGGCGAAAATGGGAGGAAAAGAATGGTACTTTTTTAGCCTCCGGGACCGGAAGTACCCGACGGGAGTGAGGACGAATAGGGCGACGAATACAGGATA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT3G15170.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttctttttt-ctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                                                             || ||  ||  ||     |   |  | |  ||  |   ||   ||| |    ||  | | |  || |   | | |      |||  || | |  |    ||||||||||| || ||||| |||||||| ||||||||||| |   | || ||||| || ||||| |||||  || | |||||  | ||||| || || || ||
--------------------------------------------------------------------------------------------ctttatatcaacccttcacatgagtgaccagtcctt---gttcggtt-ctaaaacagagtcctccttactctgtttgtaactttcacttataccatttgagcagAGAAAGCGAAAATGGGGGAGAAGGAGTGGTACTTCTTCACACTAAGAGACCGTAAATACCCAACGGGACTGAGAACGAACAGAGCAACAGAAGCTGGTTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv17s0000g03660.t01 (Vitis vinifera), 3'ss of exon 1
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                                   || | | |||||||||      || | | ||||   |      | |||  | ||  ||| |    |  ||         | ||||      |  ||| |    | | ||   |           ||||  || ||   |||||||||||| |||||||| |||||||||||||| ||||| || |||||||| || || || || || || ||||| || || |||||
-------------------------------------------------------------------ctagtggttgaatttg----gctgaagt-atggttctt-----atcttaaattccttca-taatataaag------aagcaaaatgtgatgatgaatttggaatatattgggt-----------gcagCCAAGGCTTCCATGGGAGAGAAAGAATGGTATTTCTTTAGCTTGAGAGACCGAAAATACCCGACAGGCATTCGAACCAACCGAGCAACTGAAGCAGGCTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv08s0007g07640.t01 (Vitis vinifera), 3'ss of exon 1
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                                                  |     |  |  || |  | |||   |  | ||    | | |   |||| |   ||     || ||  ||| ||     ||||| |  || |   |  ||          ||||||||||||| |||||||||||||||||||| |||||| ||  ||| ||  ||||||| || || || ||| | |||||||| || |||||  | || ||
----------------------------------------------------------------------------------gtaatctctctctc-tatctttctctgtgagttct--ttggttttttggatttggtatttggggcgttatttct-----aatcttttattggacttgattgt-------acagAGAAAGCAAAGATGGGAGAGAAGGAATGGTATTTCTTTTGCCAGAGAGATAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCTACCGAATCTGGATA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv19s0014g02200.t01 (Vitis vinifera), 3'ss of exon 1
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                                                                  |    | | |   || |    |    || ||      |    ||   || |   |||  |||     |        || |||||    | |   |||| |||||||| |||||||||||||| ||||||||||| ||| |  | || |||||||| || || ||  | || || || ||||| || || || |||||
--------------------------------------------------------------------------------------------------gttggtaccacctacctacccttctacattttctctcaaacacccacacaa---tccattaa----tttatagccattttttttaacatacaaacagAAAAAGCAAAGATGGGAGAGAAGGAGTGGTACTTCTTCAGCCTCCGCGATCGGAAGTATCCAACTGGCCTCCGAACCAACCGGGCCACAGAAGCTGGCTA

upper sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
                                                  | ||  ||| | |   |    |  |   || || || | ||   |    |   |||   ||| ||||    |||||  ||    ||| ||   |  ||||  || |  |||    | ||||  ||      |  | |    ||||||||||| ||  | || |||||||| ||||||||||| ||| || |||| || ||||| |||||||| ||||| || ||| | || |||||    || ||
----------------------------------------------gtgacacaaactcccaatccttccagtatc--atctggtgtagtgtgct----gtcctcc---gaatttgg---tgatcatgtgaactgagatg---gaccgaa--tcattgaaattagtttcctcggtgggaaatgatctt---gcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 21

ATCACCTTCTACCTCGTCAAGAAGGTCGTCAACACAAAATTCGCGGCGCACGCCATCGCCGAGGTCGATCTCAACAAGTTCGAGCCATGGGATCTACCCGgtaaggagga ... ttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA
              ctctaaa  putative branch site (score: 21)
                       tctctcctttgttctt  putative PPT
                                     ttttttcttt  TA-rich tract