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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctttccatcgtttcctttcctggttgtgatcgagcttcgctgttccagGATCACCATTGTTTGTGGATCAACAACTGCGTTGGTCACAACAACTACAAGTCCTTTTTCCTGTTCGTCCTCTACATCACCTCAGCATGCATCTACTCTC

Basic information

species Selaginella moellendorffii
transcript EFJ22533
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22533 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: AT3G09320.1 (Arabidopsis thaliana), 3'ss of exon 2
-----------------------------------------gtaagtttctttccatcgtttcctttcctggttgtgatcgagcttcgctg--ttccagGATCACCATTGTTTGTGGATCAACAACTGCGTTGGTCACAACAACTACAAGTCCTTTTTCCTGTTCGTCCTCTACATCACCTCAGCATGCATCTACTCTC
                                          | |  |       |||  |    |     ||| | | |   | ||  ||  ||  |||| ||||||||| | ||||||||||||||||| || ||||  |||||||||  ||| ||  | || ||  ||||        | |||||  | || ||||
gtatgctctactgaacacatatgtttcctgccaaactaaacatgaaatctcccaaatccatgtgatattatgtt-taaccagtcgtctttgatttgaagGACCACCATTGTATCTGGATCAACAACTGCGTAGGACACACTAACTACAAGGTCTTCTTTGTCTTTGTTGTCTATGCGGTGACTGCATGTGTATATTCTC

upper sequence: EFJ22533 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S356_36V6.1 (Physcomitrella patens), 3'ss of exon 2
-----------------------------------gtaagtttctttccatcgtttcctttcctggttgtgatcga--gcttc-------gctgttccagGATCACCATTGTTTGTGGATCAACAACTGCGTTGGTCACAACAACTACAAGTCCTTTTTCCTGTTCGTCCTCTACATCACCTCAGCATGCATCTACTCTC
                                   | |   ||||           | |  |  |  ||| |   |   ||||       | | |  ||||||||||||||| | |||||||| ||||| || || ||||||||||| ||| |||| || || |||||||| ||  |       ||| || |  | ||  
tgccatacttaaggcgggtctcgtgttttcaggatgcagtgttctaaaagctaacccttcccacgtctgtaaataaccacttcatgtggagttttggcagGATCACCATTGTGTATGGATCAATAACTGTGTAGGCCACAACAACTATAAGGCCTTCTTTCTCTTCGTCCTGTATGTAGTAGGTGCAAGCTTACAATCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagtttctttccatcgtttcctttcctggttgtgatcgagcttcgctgttccagGATCACCATTGTTTGTGGATCAACAACTGCGTTGGTCACAACAACTACAAGTCCTTTTTCCTGTTCGTCCTCTACATCACCTCAGCATGCATCTACTCTC
                                         cttcgct  CT-rich tract