1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTCTTGGAGGCCGCTAAACAACTCGATGCCACTCCAAGCCGCTGCCTTGTCATCGAAGACTCTCCgtaagttcaaaacttccaagttagttcttggcattttgtgctaactatcctatattatag
species | Selaginella moellendorffii |
transcript | EFJ22483 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCCGCTGCCTTGTCATCGAAGACTCTCC AACTGGTATCACAGCAGGCAAAGCAGCAGGAATGAAAGTAGTGGCTGTTCCEST: gi|169027651|gb|FE434840.1|FE434840
genomic: AGCCGCTGCCTTGTCATCGAAGACTCTCCgtaagttcaa ... tatattatagAACTGGTATCACAGCAGGCAAAGCAGCAGGAATGAAAGTAGTGGCTGTTCC
EST: AAACAACTCGATGCCACTCCAAGCCGCTGCCTTGTCATCGAAGACTCTCC AACTGGTATCACAGCAGGCAAAGCAGCAGGAATGAAAGTAGTGGCTGTTCCEST: gi|169075505|gb|FE482515.1|FE482515
genomic: AAACAACTCGATGCCACTCCAAGCCGCTGCCTTGTCATCGAAGACTCTCCgtaagttcaa ... tatattatagAACTGGTATCACAGCAGGCAAAGCAGCAGGAATGAAAGTAGTGGCTGTTCC
EST: AAACAACTCGATGCCACTCCAAGCCGCTGCCTTGTCATCGAAGACTCTCC AACTGGTATCACAGCAGGCAAAGCAGCAGGAATGAAAGTAGTGGCTGTTCC
genomic: AAACAACTCGATGCCACTCCAAGCCGCTGCCTTGTCATCGAAGACTCTCCgtaagttcaa ... tatattatagAACTGGTATCACAGCAGGCAAAGCAGCAGGAATGAAAGTAGTGGCTGTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCTTGGAGGCCGCTAAACAACTCGATGCCACTCCAAGCCGCTGCCTTGTCATCGAAGACTCTCCgtaagttcaaaacttccaagttagttcttggcattttgtgctaactatcctatattatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA