1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCGAAATTGGAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttttagtctcttcttcacgctcgctacttactacttgctggattcacccag
species | Selaginella moellendorffii |
transcript | EFJ22466 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTTEST: gi|169070532|gb|FE479809.1|FE479809
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTTEST: gi|169054264|gb|FE463205.1|FE463205
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTNTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTTEST: gi|169019639|gb|FE427468.1|FE427468
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTTEST: gi|70670894|gb|DN839471.1|DN839471
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTTEST: gi|169068421|gb|FE478998.1|FE478998
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTTEST: gi|169025044|gb|FE434670.1|FE434670
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTTEST: gi|169106951|gb|FE508834.1|FE508834
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTTEST: gi|169046729|gb|FE456667.1|FE456667
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTTEST: gi|169036088|gb|FE445128.1|FE445128
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTTEST: gi|169060729|gb|FE469755.1|FE469755
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTTEST: gi|169070531|gb|FE479808.1|FE479808
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTTEST: gi|169054265|gb|FE463206.1|FE463206
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTTEST: gi|169019638|gb|FE427467.1|FE427467
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTTEST: gi|169068959|gb|FE477703.1|FE477703
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTTEST: gi|169048812|gb|FE455292.1|FE455292
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTEST: gi|169099322|gb|FE502108.1|FE502108
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTTEST: gi|169099321|gb|FE502107.1|FE502107
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTTEST: gi|169044589|gb|FE450628.1|FE450628
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTTEST: gi|169042965|gb|FE452319.1|FE452319
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTTEST: gi|169036087|gb|FE445127.1|FE445127
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTTEST: gi|169025043|gb|FE434669.1|FE434669
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTTEST: gi|169060728|gb|FE469754.1|FE469754
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTTEST: gi|169027095|gb|FE435629.1|FE435629
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
EST: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAG GTCTTAGAGCTCACTAGAAGAACTAGGGAACTTTTGCCACACATCACTCTT
genomic: GAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttt ... attcacccagGTCTTAGAGCTCACTAGAAGAACAAGAGAACTTTTGCCACACATCACTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGAAATTGGAAACTTCGACTCGTTTTACGACAGTGGCAGAGTTTTTTCTTCCAAGGAGgtgaaacttttagtctcttcttcacgctcgctacttactacttgctggattcacccag
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