Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtgtgtcttggtcagtcatacgttccttgcgcttatgcttgttcgttttctagGTGGAGACTTCTCGGGTGCTTCTTGCCATTATTCATAATCCGCTCTATCAAATGAACGTGGATATACTCCACCAAGTTTTCAGCCCTCATGGCAATATCG

Basic information

species Selaginella moellendorffii
transcript EFJ22434
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169048866|gb|FE456646.1|FE456646
EST:     AGGTCGAGTATTCCTCGCGCCTGAAGCTGAGCGAATCCTAAAACCCCAAA                         GTGGAGACTTCTCGGGTGCTTCTTGCCATTATTCATAATCCGCTCTATCCA
genomic: AGGTCGAGTATTCCTCGCGCCAGAAGCTGAGCGAATCCGAAAACCCCAAAgtctgtgtgt ... cgttttctagGTGGAGACTTCTCGGGTGCTTCTTGCCATTATTCATAATCCGCTCTATCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgtgtcttggtcagtcatacgttccttgcgcttatgcttgttcgttttctagGTGGAGACTTCTCGGGTGCTTCTTGCCATTATTCATAATCCGCTCTATCAAATGAACGTGGATATACTCCACCAAGTTTTCAGCCCTCATGGCAATATCG
                                       cttgttcgttttct  CT-rich tract
                                               ttttcta  TA-rich tract