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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcaacttagtgatgcaaagcttttctagatatctggctatcttcgtttttctcagGACGCAGTGACAGATTCGGCAAAAGAAATGAAATCTTTTATGATGAAGTTGGCAGCAGACAGCGATGTCAAAGCCAGCGTGATTCTCATGGCAATTTTCC

Basic information

species Selaginella moellendorffii
transcript EFJ22430
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169030607|gb|FE438733.1|FE438733
EST:     CAAAGGCATTGCTTATGAAACTCTCCCACAGCATCTACAAGGGGAATGAG                         GACGCAGTGACAGATTCGGCAAAAGAAATGAAAAT-TTTTATGATGAAGTT
genomic: CAAAGGCATTGCTCATGAAACTCTCCCACAGCATCTACAAGGGGAATGAGgtatggcaac ... tttttctcagGACGCAGTGACAGATTCGGCAAAAGAAATGAAA-TCTTTTATGATGAAGTT
EST: gi|169029679|gb|FE437350.1|FE437350
EST:     CAAAGGCATTGCTTATGAAACTCTCCCACAGCATCTACAAGGGGAATGAG                         GACGCAGTGACAGATTCGGCAAAAGAAATGAAAAT-TTTTATGATGAAGTT
genomic: CAAAGGCATTGCTCATGAAACTCTCCCACAGCATCTACAAGGGGAATGAGgtatggcaac ... tttttctcagGACGCAGTGACAGATTCGGCAAAAGAAATGAAA-TCTTTTATGATGAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaacttagtgatgcaaagcttttctagatatctggctatcttcgtttttctcagGACGCAGTGACAGATTCGGCAAAAGAAATGAAATCTTTTATGATGAAGTTGGCAGCAGACAGCGATGTCAAAGCCAGCGTGATTCTCATGGCAATTTTCC
                                    ctatcttcgtttttct  CT-rich tract
                    ttttcta  TA-rich tract