1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaacacgagatcgctttctacaaaagtttacaatggttgtgaacttttctcgcagGAACTAAAATGACAGGCAGCGAACACAATGATGAGTTCTACATTGACGAAATTGGTAACGTAAGAACACGTACAAATCGATCTGGTGGCATCCAG
species | Selaginella moellendorffii |
transcript | EFJ22409 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATGTCTTTGCCTGCCACCAAAGGCTTTGAGATTGGAAGTGGCTTTGAAG GAACTAAAATGACAGGCAGCGAACACAATGATGAGTTCTACATTGACGAAAEST: gi|169041043|gb|FE447652.1|FE447652
genomic: CATGTCTCTGCCTGCCACCAAAGGCTTCGAGATTGGAAGTGGCTTTGAAGgtaacacgag ... tttctcgcagGAACTAAAATGACAGGCAGCGAACACAATGATGAGTTCTACATTGACGAAA
EST: CATGTCTTTGCCTGCCACCAAAGGCTTTGAGATTGGAAGTGGCTTTGAAG GAACTAAAATGACAGGCAGCGAACACAATGATGAGTTCTACATTGACGAAAEST: gi|169041042|gb|FE447651.1|FE447651
genomic: CATGTCTCTGCCTGCCACCAAAGGCTTCGAGATTGGAAGTGGCTTTGAAGgtaacacgag ... tttctcgcagGAACTAAAATGACAGGCAGCGAACACAATGATGAGTTCTACATTGACGAAA
EST: CATGTCTTTGCCTGCCACCAAAGGCTTTGAGATTGGAAGTGGCTTTGAAG GAATTAAAATGACAGGCAGCGAACACAATGATGAGTTTTACATTGACGAAA
genomic: CATGTCTCTGCCTGCCACCAAAGGCTTCGAGATTGGAAGTGGCTTTGAAGgtaacacgag ... tttctcgcagGAACTAAAATGACAGGCAGCGAACACAATGATGAGTTCTACATTGACGAAA
taacacgagatcgctttctacaaaagtttacaatggttgtgaacttttctcgcagGAACTAAAATGACAGGCAGCGAACACAATGATGAGTTCTACATTGACGAAATTGGTAACGTAAGAACACGTACAAATCGATCTGGTGGCATCCAG
cttttctcgc CT-rich tract
aaaagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacacgagatcgctttctacaaaagtttacaatggttgtgaacttttctcgcagGAACTAAAATGACAGGCAGCGAACACAATGATGAGTTCTACATTGACGAAATTGGTAACGTAAGAACACGTACAAATCGATCTGGTGGCATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG