1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cgttcactggagtggatccatctcgattcaatctgattgttgccataagtcactccataaatattctccacttttgtgaggcttgacgctgtgatgccagGTCTTACTCAAACAAGCGCGCTTGAGACTTGCAAGACAG
species | Selaginella moellendorffii |
transcript | EFJ22386 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
taagtcactccataaatattctccacttttgtgaggcttgacgctgtgatgccagGTCTTACTCAAACAAGCGCGCTTGAGACTTGCAAGACAG
gcttgac putative branch site (score: 4)
ataaatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgttcactggagtggatccatctcgattcaatctgattgttgccataagtcactccataaatattctccacttttgtgaggcttgacgctgtgatgccagGTCTTACTCAAACAAGCGCGCTTGAGACTTGCAAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
cgttcac
- - - - - - - - -ccatctc
- - - - - - - - - - - - - ttcaatc
- - - - - - - - - - - - - - - - - - ttgttgc
- - - - - - - - - - - - - - - - - - - - - - - - -tcactcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggcttg