1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagatatctcttttatactccttatgagaagaagctggcttatcttatgcctctcacagATCGATATAGTCATCCGGAACATAGAGGGATACGAAGCCTTCATCGACGAAGCAAACAAGGTGCTACACATCATCAAAGAAAAGAAGATTATCATGGCTC
species | Selaginella moellendorffii |
transcript | EFJ22375 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGAGGTAGCTTTGAGAACGTTGAAGGCAAACTGTGAAGGTTTCCTACAG ATCGATATAGTCATCCGGAACATAGAGGGATACGAAGCCTTCATCGACGAAEST: gi|169081298|gb|FE489782.1|FE489782
genomic: CAGAGGTAGCTTTGAGAACGTTGAAGGCAAACTGTGAAGGTTTCCTACAGgtagatatct ... cctctcacagATCGATATAGTCATCCGGAACATAGAGGGATACGAAGCCTTCATCGACGAA
EST: CAGAGGTAGCTTTGAGAACGTTGAAGGCAAACTGTGAAGGTTTCCTACAG ATCGATATAGTCATCCGGAACATAGAGGGATACGAAGCCTTCATCGACGAAEST: gi|169035286|gb|FE442625.1|FE442625
genomic: CAGAGGTAGCTTTGAGAACGTTGAAGGCAAACTGTGAAGGTTTCCTACAGgtagatatct ... cctctcacagATCGATATAGTCATCCGGAACATAGAGGGATACGAAGCCTTCATCGACGAA
EST: CAGAGGTAGCTTTGAGAACGTTGAAGGCAAACTGTGAAGGTTTCCTACAG ATCGATATAGTCATCCGGAACATAGAGGGATACGAAGCCTTCATCGACGAA
genomic: CAGAGGTAGCTTTGAGAACGTTGAAGGCAAACTGTGAAGGTTTCCTACAGgtagatatct ... cctctcacagATCGATATAGTCATCCGGAACATAGAGGGATACGAAGCCTTCATCGACGAA
tatctcttttatactccttatgagaagaagctggcttatcttatgcctctcacagATCGATATAGTCATCCGGAACATAGAGGGATACGAAGCCTTCATCGACGAAGCAAACAAGGTGCTACACATCATCAAAGAAAAGAAGATTATCATGGCTC
tgcctctc CT-rich tract
ttttatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagatatctcttttatactccttatgagaagaagctggcttatcttatgcctctcacagATCGATATAGTCATCCGGAACATAGAGGGATACGAAGCCTTCATCGACGAAGCAAACAAGGTGCTACACATCATCAAAGAAAAGAAGATTATCATGGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG