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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttctcagtttgaatgttcgtgtttcttatcaagctaagttgcagGCCCATGTCTATTCATATGGAAACGGATGTGTGGCATTCCTTGCCAACGTCGACAGTATGAACGACACAGTTGTAGAGTTTAGAAACGTTTCCTATTCCC

Basic information

species Selaginella moellendorffii
transcript EFJ22361
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169076244|gb|FE485690.1|FE485690
EST:     TTATTTTGTCAAGCGAAGGACAGCATAGTGAACTCGGTCCAAATCAAGAG                         GCCCATGTCTATTCATATGGAAACGGATGTGTGGCATTCCTTGCCAACGTC
genomic: TTATTTTGTCAAGCGAAGGACAGCATAGTGAACTCGGTCCAAATCAAGAGgtgtttctca ... taagttgcagGCCCATGTCTATTCATATGGAAACGGATGTGTGGCATTCCTTGCCAACGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtttctcagtttgaatgttcgtgtttcttatcaagctaagttgcagGCCCATGTCTATTCATATGGAAACGGATGTGTGGCATTCCTTGCCAACGTCGACAGTATGAACGACACAGTTGTAGAGTTTAGAAACGTTTCCTATTCCC
                                             tttcttat  TA-rich tract