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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactttgcttttgcagtgtcatcatttttcttgctcatctttccgttcttcgcagGTTCTTTTAGGTGGAGGTACCTCACTGCAAGCATGGCGCAAGCGGCTTGCCAGTGAAACGCGTTCAGGGAAGATATGTGGTTCGGGTTTCAGTAGTACAT

Basic information

species Selaginella moellendorffii
transcript EFJ22347
intron # 11
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactttgcttttgcagtgtcatcatttttcttgctcatctttccgttcttcgcagGTTCTTTTAGGTGGAGGTACCTCACTGCAAGCATGGCGCAAGCGGCTTGCCAGTGAAACGCGTTCAGGGAAGATATGTGGTTCGGGTTTCAGTAGTACAT
                     tcatttttcttgctca  CT-rich tract
                    atcattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagactttgcttttgcagtgtcatcatttttcttgctcatctttccgttcttcgcagGTTCTTTTAGGTGGAGGTACCTCACTGCAAGCATGGCGCAAGCGGCTTGCCAGTGAAACGCGTTCAGGGAAGATATGTGGTTCGGGTTTCAGTAGTACAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA