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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatactagttttgtctcgagtaaatgttttatgagatgcgatagcgcagGTTCGCGCTGCTGGGCCCAACGTTGCCGGAGTAATACTTCAACATGAGCTCCCTCATTTGTCTCATCTCGGTGTGCGAGCTCGTCAG

Basic information

species Selaginella moellendorffii
transcript EFJ22307
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169076401|gb|FE486016.1|FE486016
EST:     GGACCAGTTATACTTCTGGTGAAACAAGCTGACGGCGATGAGGAG                         GTTCGCGCTGCTGGGCCCAACGTTGCCGGAGTAATACTTCAACAGGAGCTC
genomic: GGACCAGTTATACTTCTGGTGAAACAAGCTGACGGCGATGAGGAGgtaatactag ... gatagcgcagGTTCGCGCTGCTGGGCCCAACGTTGCCGGAGTAATACTTCAACATGAGCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatactagttttgtctcgagtaaatgttttatgagatgcgatagcgcagGTTCGCGCTGCTGGGCCCAACGTTGCCGGAGTAATACTTCAACATGAGCTCCCTCATTTGTCTCATCTCGGTGTGCGAGCTCGTCAG
                               agtaaatgttttat  TA-rich tract