Sequence
atgc intronic sequence ATGC exonic sequence...gaggaggagagctccaagaacgaggccatgcatctttaccacgagatgaatctccacggagtggaaccaaacaagttcactctcaccagtgttctcggagCCTGTTCGAGCTTGGATCAAGGCAAAGCTCTCCACCAGCGGATCACTGCGAGTGGAGTCGACTCGGATCCCACCGTCGCAACTTGCCTGCTCACCATGTA
Basic information
species | Selaginella moellendorffii |
transcript | EFJ22296 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgaatctccacggagtggaaccaaacaagttcactctcaccagtgttctcggagCCTGTTCGAGCTTGGATCAAGGCAAAGCTCTCCACCAGCGGATCACTGCGAGTGGAGTCGACTCGGATCCCACCGTCGCAACTTGCCTGCTCACCATGTA
ctctcac putative branch site (score: 3)
tgttctc putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaggaggagagctccaagaacgaggccatgcatctttaccacgagatgaatctccacggagtggaaccaaacaagttcactctcaccagtgttctcggagCCTGTTCGAGCTTGGATCAAGGCAAAGCTCTCCACCAGCGGATCACTGCGAGTGGAGTCGACTCGGATCCCACCGTCGCAACTTGCCTGCTCACCATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - -agagctc
- - - - - - - -aagaacga
- - - - - - - - - - - - - - - - tctttac
- - - - - - - - - - - - - - - - - - - - - -agatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - tctccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacaag