1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttcggccagagctcatcgagatctctagacacgagctgctagaccccttcaaagggaaggatttccttcttgagcagctcgaggctttcttctgacaaagACTGCTTCCAACTGTGTCCTTTGAGCATGGTGTTACTCCGGCATCAAAGCCACTCGGTTTTGTGGGAAGAGTTGGAATGGATTTTCCCGTGATCCAGGGA
species | Selaginella moellendorffii |
transcript | EFJ22261 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
ccttcaaagggaaggatttccttcttgagcagctcgaggctttcttctgacaaagACTGCTTCCAACTGTGTCCTTTGAGCATGGTGTTACTCCGGCATCAAAGCCACTCGGTTTTGTGGGAAGAGTTGGAATGGATTTTCCCGTGATCCAGGGA
ttctgac putative branch site (score: 2)
ctttcttct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcggccagagctcatcgagatctctagacacgagctgctagaccccttcaaagggaaggatttccttcttgagcagctcgaggctttcttctgacaaagACTGCTTCCAACTGTGTCCTTTGAGCATGGTGTTACTCCGGCATCAAAGCCACTCGGTTTTGTGGGAAGAGTTGGAATGGATTTTCCCGTGATCCAGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - -agagctc
- - - - - - - - cgagatc
- - - - - - - - - - - - - - - - gagctgc
- - - - - - - - - - - - - - - - - - - - - -ccccttc
- - - - - - - - - - - - - - - - - - - - - - - - - aaagggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctttct