1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtacactggatggctttcttaaagttttgattctttgtagatttttctgagtggttcttggcgcagCTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTAAATTCGCTGGTGGGCCGGACGGCGTCCCCGGACTATCTCCAAAAGATCA
species | Selaginella moellendorffii |
transcript | EFJ22209 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTT CTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTAEST: gi|169094577|gb|FE492449.1|FE492449
genomic: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTTgtaagtacac ... cttggcgcagCTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTA
EST: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTT CTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTAEST: gi|169068115|gb|FE476885.1|FE476885
genomic: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTTgtaagtacac ... cttggcgcagCTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTA
EST: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTT CTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTAEST: gi|169039277|gb|FE447821.1|FE447821
genomic: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTTgtaagtacac ... cttggcgcagCTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTA
EST: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTT CTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTAEST: gi|169018700|gb|FE426677.1|FE426677
genomic: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTTgtaagtacac ... cttggcgcagCTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTA
EST: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTT CTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTAEST: gi|169101380|gb|FE502523.1|FE502523
genomic: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTTgtaagtacac ... cttggcgcagCTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTA
EST: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTT CTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTAEST: gi|169068129|gb|FE476886.1|FE476886
genomic: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTTgtaagtacac ... cttggcgcagCTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTA
EST: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTT CTCGCGCTTTACACGATTAGAACTEST: gi|169047430|gb|FE457498.1|FE457498
genomic: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTTgtaagtacac ... cttggcgcagCTCGCGCTTTACACGATTAGAACT
EST: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTT CTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTA
genomic: TGCTCGCTGCTCGCTACTTCTGGTGGATCGATCCGACCGGCGCCATTGTTgtaagtacac ... cttggcgcagCTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTA
ggctttcttaaagttttgattctttgtagatttttctgagtggttcttggcgcagCTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTAAATTCGCTGGTGGGCCGGACGGCGTCCCCGGACTATCTCCAAAAGATCA
ttttgat putative branch site (score: 32)
ttctt putative PPT
ttaaagttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacactggatggctttcttaaagttttgattctttgtagatttttctgagtggttcttggcgcagCTCGCGCTTTACACGATTAGAACTTGGTCGGTCACAGTGCTAGACAACGTAAATTCGCTGGTGGGCCGGACGGCGTCCCCGGACTATCTCCAAAAGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA