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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatatggcaaagtctatattcacaagctgatcctcgtttccgttgtgcagCTGAAGTGTTTGCAGACACGTCTCCGGTCGTTGTATCTGTCCTGGATGGCTACAACGTGTGCATATTTGCCTACGGACAAACAGGTACTGGCAAAACATT

Basic information

species Selaginella moellendorffii
transcript EFJ22194
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ04247 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: LOC_Os03g02290.2 (Oryza sativa), 3'ss of exon 1
-------------------------------------------------------------------------------------------------------gtgagta--tatggcaa-agtctatattcacaagctgatcctcg--tttccgtt---gtgcagCTGAAGTGTTTGCAGACACGTCTCCGGTCGTTGTATCTGTCCTGGATGGCTACAACGTGTGCATATTTGCCTACGGACAAACAGGTACTGGCAAAACATT
                                                                                                       |  ||||  ||  ||||  ||  ||  | |||  || |||      |||||  |   |||||||||| |||| ||| ||  | |||||  | |||   || ||| ||||||||||||| |||||||||||||| |||||||||||||| || || || || ||
gtatttctaactatgctggagtttctattgggcctctttgtcctttacagttcttgtgtttttttagacatgaaagatcaaaatggtagctctataatgtgcagctagtaattaaagcaatggtgcattataacat-ctaatctgtaaatttccaataatgtgcagCTGATGTGTATGCCGATGCATCTCCACTGGTTACTTCGGTCTTGGATGGCTACAATGTGTGCATATTTGCGTACGGACAAACAGGAACAGGGAAGACTTT

upper sequence: EFJ04247 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: GLYMA09G33340.1 (Glycine max), 3'ss of exon 7
-------------------------------------------------------gtgagtatatggcaaagt--ctatattcacaagc--tgatcctcgtttccgttgtgcagCTGAAGTGTTTGCAGACACGTCTCCGGTCGTTGTATCTGTCCTGGATGGCTACAACGTGTGCATATTTGCCTACGGACAAACAGGTACTGGCAAAACATT
                                                        | | ||| |  || | |  | |  ||   || |     | ||   |    ||   ||| ||| || ||||| ||  | ||  |  | ||  | ||||| |||||||||||||| || ||||| ||||| || ||||||||||| || || || |||||
gtatctgaaaagtgtaacacaataactgtttgcttgagccttgaatgtcatcgctcttattatttaacataattgcaacttttctaaacaacagtgctttctatgttttaacagTTGATGTTTTTGCTGATGCATCATCAATGGTAATCTCTGTACTGGATGGCTACAATGTTTGCATCTTTGCTTATGGACAAACAGGAACAGGGAAGACATT

upper sequence: EFJ04247 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: AT2G22610.2 (Arabidopsis thaliana), 3'ss of exon 9
--------------------------------gtgagtatatggcaaagtctatattcacaagctgatcctcgtttccgttgtgcagCTGAAGTGTTTGCAGACACGTCTCCGGTCGTTGTATCTGTCCTGGATGGCTACAACGTGTGCATATTTGCCTACGGACAAACAGGTACTGGCAAAACATT
                                 | ||| ||    | |||    ||| ||||     |     | |  ||||||||| ||| || || || ||  | |||||| | ||||| || ||||| || |||||||| || || || |||||||||||||||||||| || || || || ||
gtagcgtgctatgtcatggtcaagttagatcattaagtttaaataacagtaacaattaacaaa---gtttctatctttgttgtgcagTTGATGTCTTCGCCGATGCTTCTCCGATGGTTGTTTCAGTCCTAGACGGCTACAATGTTTGTATTTTTGCCTACGGACAAACAGGAACAGGAAAGACGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagtatatggcaaagtctatattcacaagctgatcctcgtttccgttgtgcagCTGAAGTGTTTGCAGACACGTCTCCGGTCGTTGTATCTGTCCTGGATGGCTACAACGTGTGCATATTTGCCTACGGACAAACAGGTACTGGCAAAACATT
                             agctgat  putative branch site (score: 4)
                                   tcctcgtttccgtt  CT-rich tract
                 tctatatt  TA-rich tract