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gtaaaagttttagtctcttgtatccagagtacttactaatcctcctgttttgcagGAGCGCATGACTTTGAAACACAAAAACACGTCTCGCTGGGCAAAAAGAATTCTAAAGCGTGGCTTGCAGCAACACAATGAGGGAACAAGAGAGGCTATCA
species | Selaginella moellendorffii |
transcript | EFJ22186 |
intron # | 29 |
splice site | 3' |
intron type | U2 |
EST: ACGTACAACTCGAGGAAACTATG-AGCAGGGAG-TG-ATNNCGTGCAAGG GAGCGCATGACTTTGAAACACAAAAACACGTCTCGCTGGGCAAAAAGAATEST: gi|169116541|gb|FE517566.1|FE517566
genomic: ACGTACAACTCGAGGAAACTATGAAGCA-GGAGTTGAAT--CGTGCAAGGgtaaaagttt ... tgttttgcagGAGCGCATGACTTTGAAACACAAAAACACGTCTCGCTGGGCAAAAAGAAT
EST: GAAACTATGAAGCAGGAGTTGAATCGTGCAAGG GAGCGCATGACTTTGAAACACAAAAACACGTCTCGCTGGGCAAAAAGAATTEST: gi|169116540|gb|FE517565.1|FE517565
genomic: GAAACTATGAAGCAGGAGTTGAATCGTGCAAGGgtaaaagttt ... tgttttgcagGAGCGCATGACTTTGAAACACAAAAACACGTCTCGCTGGGCAAAAAGAATT
EST: GAAACTATGAAGCAGGAGTTGAATCGTGCAAGG GAGCGCATGACTTTGAAACACAAAAACACGTCTCGCTGGGCAAAAAGAATTEST: gi|169088458|gb|FE495504.1|FE495504
genomic: GAAACTATGAAGCAGGAGTTGAATCGTGCAAGGgtaaaagttt ... tgttttgcagGAGCGCATGACTTTGAAACACAAAAACACGTCTCGCTGGGCAAAAAGAATT
EST: CTGACGTACAACTCGAGGAAACTATGAAGCAGGAGTTGAATCGTGCAAGG GAGCGCATGACTTTGAAACACAAAAACACGTCTCGCTGGGCAAAAAGAATT
genomic: CTGACGTACAACTCGAGGAAACTATGAAGCAGGAGTTGAATCGTGCAAGGgtaaaagttt ... tgttttgcagGAGCGCATGACTTTGAAACACAAAAACACGTCTCGCTGGGCAAAAAGAATT
gtaaaagttttagtctcttgtatccagagtacttactaatcctcctgttttgcagGAGCGCATGACTTTGAAACACAAAAACACGTCTCGCTGGGCAAAAAGAATTCTAAAGCGTGGCTTGCAGCAACACAATGAGGGAACAAGAGAGGCTATCA
tactaat putative branch site (score: 5)
tcctcctgttttgc CT-rich tract
ttactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaagttttagtctcttgtatccagagtacttactaatcctcctgttttgcagGAGCGCATGACTTTGAAACACAAAAACACGTCTCGCTGGGCAAAAAGAATTCTAAAGCGTGGCTTGCAGCAACACAATGAGGGAACAAGAGAGGCTATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG