1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgcaacaccctgttttggaatgagctgactggcttatcttcgataaacaagGAAGAAGTTTGGGTCTCTGGAGTAGACTACACCGGTGCTGCTTCCGACCCTTTGAAGGATTATGCTCCAAGGATCGTGGAAGACATGAACAAGAAAAACT
species | Selaginella moellendorffii |
transcript | EFJ22164 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTCACGATGAACGTGGAGGAAGTTTTCCAATGTCAGGATTTAAGCGAG GAAGAAGTTTGGGTCTCTGGAGTAGACTACACCGGTGCTGCTTCCGACCCTEST: gi|169115527|gb|FE518036.1|FE518036
genomic: TGTTCACGATGAACGTGGAGGAAGTTTTCCAATGTCAGGATTTAAGCGAGgtatgcaaca ... gataaacaagGAAGAAGTTTGGGTCTCTGGAGTAGACTACACCGGTGCTGCTTCCGACCCT
EST: TGTTCACGATGAACGTGGAGGAAGTTTTCCAATGTCAGGATTTAAGCGAG GAAGAAGTTTGGGTCTCTGGAGTAGACTACACCGGTGCTGCTTCCGACCCT
genomic: TGTTCACGATGAACGTGGAGGAAGTTTTCCAATGTCAGGATTTAAGCGAGgtatgcaaca ... gataaacaagGAAGAAGTTTGGGTCTCTGGAGTAGACTACACCGGTGCTGCTTCCGACCCT
gtatgcaacaccctgttttggaatgagctgactggcttatcttcgataaacaagGAAGAAGTTTGGGTCTCTGGAGTAGACTACACCGGTGCTGCTTCCGACCCTTTGAAGGATTATGCTCCAAGGATCGTGGAAGACATGAACAAGAAAAACT
agctgac putative branch site (score: 18)
ataaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaacaccctgttttggaatgagctgactggcttatcttcgataaacaagGAAGAAGTTTGGGTCTCTGGAGTAGACTACACCGGTGCTGCTTCCGACCCTTTGAAGGATTATGCTCCAAGGATCGTGGAAGACATGAACAAGAAAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA