1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacgttgtagttttgagacaccgtttcgtaagttctgagattctattcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACCTCAAGAGCTGGTGCAAGAAAAACCTCGAGGAGTTCTCCAGCCTCATCGA
species | Selaginella moellendorffii |
transcript | EFJ22159 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAG TTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACCEST: gi|169044800|gb|FE451931.1|FE451931
genomic: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAGgtacgttgta ... attcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACC
EST: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAG TTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACCEST: gi|169043425|gb|FE451349.1|FE451349
genomic: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAGgtacgttgta ... attcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACC
EST: TCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAG TTGTGCGAAAGGTGGAGCCAGATGTGTTGAAACAAGAAGCTCTCGAGCACCEST: gi|169068280|gb|FE477479.1|FE477479
genomic: TCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAGgtacgttgta ... attcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACC
EST: TTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAG TTGTGCGAAAGGTGGAGCCAGATGTGTTGAAACAAGAAGCTCTCGAGCACCEST: gi|169027625|gb|FE433189.1|FE433189
genomic: TTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAGgtacgttgta ... attcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACC
EST: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAG TTGTGCGAAAGGTGGAGCCAGATGTGTTGAAACAAGAAGCTCTCGAGCACCEST: gi|169027624|gb|FE433188.1|FE433188
genomic: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAGgtacgttgta ... attcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACC
EST: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAG TTGTGCGAAAGGTGGAGCCAGATGTGTTGAAACAAGAAGCTCTCGAGCACCEST: gi|169044799|gb|FE451930.1|FE451930
genomic: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAGgtacgttgta ... attcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACC
EST: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAG TTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACCEST: gi|169033086|gb|FE441418.1|FE441418
genomic: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAGgtacgttgta ... attcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACC
EST: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAG TTGTGCGAAAGGTGGAGCCAGATGTGTTGAAACAAGAAGCTCTCGAGCACCEST: gi|169037653|gb|FE444730.1|FE444730
genomic: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAGgtacgttgta ... attcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACC
EST: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAG TTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACCEST: gi|169067766|gb|FE473363.1|FE473363
genomic: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAGgtacgttgta ... attcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACC
EST: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAG TTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACCEST: gi|169033087|gb|FE441419.1|FE441419
genomic: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAGgtacgttgta ... attcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACC
EST: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAG TTGTGCGAAAGGTGGAGCCAGATGTGTTGAAACAAGAAGCTCTCGAGCACCEST: gi|169105729|gb|FE508495.1|FE508495
genomic: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAGgtacgttgta ... attcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACC
EST: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAG TTGTGCGAAAGGTGGAGCCAGATGTGTTGAAACAAGAAGCTCTCGAGCACCEST: gi|169033759|gb|FE441687.1|FE441687
genomic: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAGgtacgttgta ... attcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACC
EST: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAG TTGTGCGAAAGGTGGAGCCAGATGTGTTGAAACAAGAAGCTCTCGAGCACC
genomic: CTCTTCGACCAAAGTTTACTGGTTCGTGTGTTTCAAGTCTTCATCAGCAGgtacgttgta ... attcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACC
gtacgttgtagttttgagacaccgtttcgtaagttctgagattctattcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACCTCAAGAGCTGGTGCAAGAAAAACCTCGAGGAGTTCTCCAGCCTCATCGA
ttctattcttcc CT-rich tract
attctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttgtagttttgagacaccgtttcgtaagttctgagattctattcttccagTTGTGCGAAAGGTGGAGCCAGAAGTGTTGAAACAAGAAGCTCTCGAGCACCTCAAGAGCTGGTGCAAGAAAAACCTCGAGGAGTTCTCCAGCCTCATCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG