1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagctataacactctcgtttctcttcagaccattcttacatttgtctttcctgtttcaagGCCGATGTCGATGGAAACGGGACGATTGACTATCTCGAATTCATCACAGCCACAATGCAGATGAACAAGATGCAAAAGGAAGATCACTTATATTCCGCGT
species | Selaginella moellendorffii |
transcript | EFJ19441 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGCTAGGATCCAACCTCAGGGATGCGGAAATCCGCCAGATCATGAACGCT GCCGATGTCGATGGAAACGGGACGATTGACTATCTCGAATTCATCACAGCCEST: gi|169114661|gb|FE516858.1|FE516858
genomic: GGCTGGGATCCAACCTCAGGGATGCGGAAATCCGCCAGATCATGAACGCTgtaagctata ... ctgtttcaagGCCGATGTCGATGGAAACGGGACGATTGACTATCTCGAATTCATCACAGCC
EST: GGCTAGGATCCAACCTCAGGGATGCGGAAATCCGCCAGATCATGAACGCT GCCGATGTCGATGGAAACGGGACGATTGACTATCTCGAATTCATCACAGCCEST: gi|169030582|gb|FE439540.1|FE439540
genomic: GGCTGGGATCCAACCTCAGGGATGCGGAAATCCGCCAGATCATGAACGCTgtaagctata ... ctgtttcaagGCCGATGTCGATGGAAACGGGACGATTGACTATCTCGAATTCATCACAGCC
EST: GGCTAGGATCCAACCTCAGGGATGCGGAAATCCGCCAGATCATGAACGCT GCCGATGTCGATGGAAACGGGACGATTGACTATCTCGAATTCATCACAGCC
genomic: GGCTGGGATCCAACCTCAGGGATGCGGAAATCCGCCAGATCATGAACGCTgtaagctata ... ctgtttcaagGCCGATGTCGATGGAAACGGGACGATTGACTATCTCGAATTCATCACAGCC
ataacactctcgtttctcttcagaccattcttacatttgtctttcctgtttcaagGCCGATGTCGATGGAAACGGGACGATTGACTATCTCGAATTCATCACAGCCACAATGCAGATGAACAAGATGCAAAAGGAAGATCACTTATATTCCGCGT
ttcttac putative branch site (score: 44)
tttgtctttcctgttt CT-rich tract
ttacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctataacactctcgtttctcttcagaccattcttacatttgtctttcctgtttcaagGCCGATGTCGATGGAAACGGGACGATTGACTATCTCGAATTCATCACAGCCACAATGCAGATGAACAAGATGCAAAAGGAAGATCACTTATATTCCGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA