1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacattcttccgaaagttttttcctccagcctcgatatttgatcttattgagttgtcatagtgttcttctttgaggttgtgtgagcttcctcggagtgcttaaactctttttctttcagGCGAGTTTGCCCGTGGTGGACGCTGCTCTCTCGAGATCGGGAGTTAACGAGGACGCCCTCATCGATCAAAACGAGTATGTGGCGCTCTTCAAGAAAGTTT
species | Selaginella moellendorffii |
transcript | EFJ19433 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGCTTTGAAACGGCTCTCGGTCGACCATGGAGCTCCACCGTACGGCGAG GCGAGTTTGCCCGTGGTGGACGCTGCTCTCTCGAGATCGGGAGTTAACGAG
genomic: ACGCTTTGAAACGGCTCTCGGTCGACCATGGAGCTCCACCGTACGGCGAGgtacattctt ... tttctttcagGCGAGTTTGCCCGTGGTGGACGCTGCTCTCTCGAGATCGGGAGTTAACGAG
tcttctttgaggttgtgtgagcttcctcggagtgcttaaactctttttctttcagGCGAGTTTGCCCGTGGTGGACGCTGCTCTCTCGAGATCGGGAGTTAACGAGGACGCCCTCATCGATCAAAACGAGTATGTGGCGCTCTTCAAGAAAGTTT
ctctttttctttc CT-rich tract
tttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattcttccgaaagttttttcctccagcctcgatatttgatcttattgagttgtcatagtgttcttctttgaggttgtgtgagcttcctcggagtgcttaaactctttttctttcagGCGAGTTTGCCCGTGGTGGACGCTGCTCTCTCGAGATCGGGAGTTAACGAGGACGCCCTCATCGATCAAAACGAGTATGTGGCGCTCTTCAAGAAAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA