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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGCCGAAGTTCCACAGTGTCCCCCGGATTGTTTCCGCTACAAGGGAACTTGGGATGTTTTCTACAAAGTCGTTCGACAGGCACGATTTCGAGAGTGTgtttttacgttgcattgactaatcgaatgaaacag

Basic information

species Selaginella moellendorffii
transcript EFJ19309
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ19309 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: Vv16s0050g02360.t01 (Vitis vinifera), 5'ss of exon 4
------------------TCCTGCCGAAGTTCCACAGTGTCCCCCGGATTGTTTCCGCTACAAGGGAACTTGGGATGTTTTCTACAAAGTCGTTCGACAGGC----ACGATTTCGAGAGTGTgtttttacgttgcattgactaatcgaatgaaacag-------------------------------------------
                  || ||    |||  ||   |||||||| |||||||| |  ||||| ||||| |||||||||||||||||| |  |||||||||         ||   |   | | |||  || |   ||  |  | |    ||    ||                                           
ATGCCCCCGTGTAGGAATTCATGGTACAGTAGCAATTTGTCCCCCTGATTGTTTTCAATACAAAGGAACATGGGATGTTTTCTACAAAATTATTCGACAGgttggtggagttataaacttatatttgaacttattataaataatttatttgttttaggaaaaatgatacatgttgagaggctttttggagtgttcagaag