1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtactacttttgacgaaacaatttttcgaggcttctcacatttctctgctgcctgtcaaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCGGTGCCAACAACGGTAGCTCGCTGGTGGTGATGTCCAAGGGAACGTCCT
species | Selaginella moellendorffii |
transcript | EFJ19085 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAG GAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCEST: gi|169034149|gb|FE444274.1|FE444274
genomic: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAGgtactacttt ... cctgtcaaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCC
EST: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAG GAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCEST: gi|169067400|gb|FE473946.1|FE473946
genomic: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAGgtactacttt ... cctgtcaaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCC
EST: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAG GAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCEST: gi|169083926|gb|FE493566.1|FE493566
genomic: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAGgtactacttt ... cctgtcaaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCC
EST: AGCTATCGCAAGTGTTTTTCCACAAG GAATGGGTCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCEST: gi|169101823|gb|FE500769.1|FE500769
genomic: AGCTATCGCAAGTGTTTTTCCACAAGgtactacttt ... cctgtcaaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCC
EST: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAG GAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCEST: gi|169073661|gb|FE483947.1|FE483947
genomic: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAGgtactacttt ... cctgtcaaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCC
EST: AGCTATCGCAAGTGTTTTTCCACAAG GAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCEST: gi|169071026|gb|FE476351.1|FE476351
genomic: AGCTATCGCAAGTGTTTTTCCACAAGgtactacttt ... cctgtcaaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCC
EST: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAG GAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCEST: gi|169055839|gb|FE465080.1|FE465080
genomic: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAGgtactacttt ... cctgtcaaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCC
EST: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAG GAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCEST: gi|169047460|gb|FE455655.1|FE455655
genomic: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAGgtactacttt ... cctgtcaaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCC
EST: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAG GAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCEST: gi|169060165|gb|FE468151.1|FE468151
genomic: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAGgtactacttt ... cctgtcaaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCC
EST: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAG GAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCEST: gi|169070415|gb|FE476780.1|FE476780
genomic: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAGgtactacttt ... cctgtcaaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCC
EST: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAG GAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCC
genomic: CTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAGgtactacttt ... cctgtcaaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCC
cttttgacgaaacaatttttcgaggcttctcacatttctctgctgcctgtcaaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCGGTGCCAACAACGGTAGCTCGCTGGTGGTGATGTCCAAGGGAACGTCCT
ttctcac putative branch site (score: 64)
tttctctgctgcct CT-rich tract
aaacaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactacttttgacgaaacaatttttcgaggcttctcacatttctctgctgcctgtcaaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCGGTGCCAACAACGGTAGCTCGCTGGTGGTGATGTCCAAGGGAACGTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG