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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctgtttttttccgacttctcttttctcttttggctgtgatttgaaacccggttattggaatggcagTGCTGCAGTCTTCCACAACGCAAGCACCCGGTTTTCGGACGGAACACGCTTTGGTCTCGGAGCGGAG

Basic information

species Selaginella moellendorffii
transcript EFJ17662
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169030629|gb|FE439561.1|FE439561
EST:     GTAACGGAGGACAAGGAAGTCGCGGAGCTATTCTTGCAACAATTGGACAG                         TGCTGCAGTCTTCCACAACGCAAGCACCCGGTTTTCGGACGGAACACGCTT
genomic: GTAACGGAGGACAAGGAAGTCGCGGAGCTATTCTTGCAACAATTGGACAGgtttgctgtt ... ggaatggcagTGCTGCAGTCTTCCACAACGCAAGCACCCGGTTTTCGGACGGAACACGCTT
EST: gi|169035470|gb|FE442861.1|FE442861
EST:     GTAACGGAGGACAAGGAAGTCGCGGAGCTATTCTTGCAACAATTGGACAG                         TGCTGCAGTCTTCCACAACGCAAGCACCCGGTTTTCGGACGGAACACGCTT
genomic: GTAACGGAGGACAAGGAAGTCGCGGAGCTATTCTTGCAACAATTGGACAGgtttgctgtt ... ggaatggcagTGCTGCAGTCTTCCACAACGCAAGCACCCGGTTTTCGGACGGAACACGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgacttctcttttctcttttggctgtgatttgaaacccggttattggaatggcagTGCTGCAGTCTTCCACAACGCAAGCACCCGGTTTTCGGACGGAACACGCTTTGGTCTCGGAGCGGAG
                           atttgaaa  TA-rich tract