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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacaagttctctgcttttagatttctttatcttcttgcaacactttttccttctcgacagATTTACTGCAGCTATAGCTGAGATGCTACTCCAGAGTGATGAAACGAACATTTATCTCCTTCCGTCGCTACCCGAAGTCTGGATTTCTGGCGCAGTAACT

Basic information

species Selaginella moellendorffii
transcript EFJ17644
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169082280|gb|FE487022.1|FE487022
EST:     GGAAATCTTTTTAATGCTCATCCACCTTTCCAGATTGATGGGAACTTTGG                         ATTTACTGCAGCTATAGCTGAGATGCTACTCCAGAGTGATGAAACGAACAT
genomic: GGAAATCTTTTTAATGCTCATCCACCTTTCCAGATTGATGGGAACTTTGGgtaagaacaa ... ttctcgacagATTTACTGCAGCTATAGCTGAGATGCTACTCCAGAGTGATGAAACGAACAT
EST: gi|169055428|gb|FE465839.1|FE465839
EST:     GGAAATCTTTTTAATGCTCATCCACCTTTCCAGATTGATGGGAACTTTGG                         ATTTACTGCAGCTATAGCTGAGATGCTACTCCAGAGTGATGAAACGAACAT
genomic: GGAAATCTTTTTAATGCTCATCCACCTTTCCAGATTGATGGGAACTTTGGgtaagaacaa ... ttctcgacagATTTACTGCAGCTATAGCTGAGATGCTACTCCAGAGTGATGAAACGAACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctctgcttttagatttctttatcttcttgcaacactttttccttctcgacagATTTACTGCAGCTATAGCTGAGATGCTACTCCAGAGTGATGAAACGAACATTTATCTCCTTCCGTCGCTACCCGAAGTCTGGATTTCTGGCGCAGTAACT
                tttctttatcttcttg  CT-rich tract
         ttttagatttctttat  TA-rich tract