1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtccgccccctttccaagttttgcaaggtgttttagctgacaaattagtccacccagGCACCAGTGGAAACTCTCTACTTTGCGGGAGAGCACACAAGCCAAAAATACAGTGGCTACGTACACGGTGCTTACTTGACGGGAATCGAGGCTGGCAAAG
species | Selaginella moellendorffii |
transcript | EFJ17625 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTCCAACTGGCCAATCGGAGTGAGCGACAGTGAATTCGAAGCAATTCAG GCACCAGTGGAAACTCTCTACTTTGCGGGAGAGCACACAAGCCAAAAATACEST: gi|169099779|gb|FE500784.1|FE500784
genomic: ACTCCAACTGGCCAATCGGAGTGAGCGACAGTGAATTCGAAGCAATTCAGgtccgccccc ... gtccacccagGCACCAGTGGAAACTCTCTACTTTGCGGGAGAGCACACAAGCCAAAAATAC
EST: ACTCCAACTGGCCAATCGGAGTGAGCGACAGTGAATTCGAAGCAATTCAG GCACCAGTGGAAACTCTCTACTTTGCGGGAGAGCACACAAGCCAAAAATAC
genomic: ACTCCAACTGGCCAATCGGAGTGAGCGACAGTGAATTCGAAGCAATTCAGgtccgccccc ... gtccacccagGCACCAGTGGAAACTCTCTACTTTGCGGGAGAGCACACAAGCCAAAAATAC
ccgccccctttccaagttttgcaaggtgttttagctgacaaattagtccacccagGCACCAGTGGAAACTCTCTACTTTGCGGGAGAGCACACAAGCCAAAAATACAGTGGCTACGTACACGGTGCTTACTTGACGGGAATCGAGGCTGGCAAAG
agctgac putative branch site (score: 3)
tccaccc putative PPT
acaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgccccctttccaagttttgcaaggtgttttagctgacaaattagtccacccagGCACCAGTGGAAACTCTCTACTTTGCGGGAGAGCACACAAGCCAAAAATACAGTGGCTACGTACACGGTGCTTACTTGACGGGAATCGAGGCTGGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG