1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttcgtcttccatgcttgcttgatgctacttcatgctcgcgatgcttggttttttaaaaaagtctcgcagttttgacggtactctctcatttctttccagGGAACAGCATCAGTTCTTTGGCTTACAACATCATTGGGCCCGCGCAGTGGGATTTGCTCATCCTGGAAGCCACGCTCCACTCCGCCGACAAAAAGACAAC
species | Selaginella moellendorffii |
transcript | EFJ17599 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
ttggttttttaaaaaagtctcgcagttttgacggtactctctcatttctttccagGGAACAGCATCAGTTCTTTGGCTTACAACATCATTGGGCCCGCGCAGTGGGATTTGCTCATCCTGGAAGCCACGCTCCACTCCGCCGACAAAAAGACAAC
ttttgac putative branch site (score: 3)
tactctctcatttctt putative PPT
tttttaaaaaagtct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcgtcttccatgcttgcttgatgctacttcatgctcgcgatgcttggttttttaaaaaagtctcgcagttttgacggtactctctcatttctttccagGGAACAGCATCAGTTCTTTGGCTTACAACATCATTGGGCCCGCGCAGTGGGATTTGCTCATCCTGGAAGCCACGCTCCACTCCGCCGACAAAAAGACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- tcgtctt
- - - - - -atgcttg
- - - - - - - cttgctt
- - - - - - - - - - - - -ctacttc
- - - - - - - - - - - - - - - - atgctcg
- - - - - - - - - - - - - - - - - - - - - - - - gtttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcagtt