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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGGTGAGGGTGAACGATCGCAAATAATCACTGGTCCAAACATGGGTGGTAAAAGTTGCTACATCCGTCAAGTTGCTCTAATCACAATCATGTCCCAGgttcgcaactatctttatttcttttcactccgtatgttttgttatcgtgcag

Basic information

species Selaginella moellendorffii
transcript EFJ17558
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17558 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: LOC_Os04g58630.2 (Oryza sativa), 5'ss of exon 10
TTCTGGTGAGGGTGAACGATCGCAAATAATCACTGGTCCAAACATGGGTGGTAAAAGTTGCTACATCCGTCAAGTTGCTCTAATCACAATCATGTCCCAGgttcgca-actatctt-tatttctt-ttcactc-cgt--atgttttgttatcgtgcag----------------------------------------------------------------------------------------------------------------------
|  ||   |  ||||    |  || ||  | || || ||||||||||| || || |||||||| || ||||||||||||||||| ||| | ||| |||||||    | | | |||   | || |  |||||||  ||  |  | || |    ||  |                                                                                                                       
TCATGCAAATAGTGAGTACTGCCAGATTGTTACAGGACCAAACATGGGAGGAAAGAGTTGCTATATTCGTCAAGTTGCTCTAATTACATTGATGGCCCAGgtataaatattgtctcacacttgtagttcactcatgttaacatgttctggatgtataacatagttactgcaaacttagttgttgggcttaggacctgaggaagtaagggtttactttgttgttatcttaccctgactctgagattatcctaacacttggtacactgatttccttag

upper sequence: EFJ17558 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: PP1S30_339V6.1 (Physcomitrella patens), 5'ss of exon 12
TTCTGGTGAGGGTGAACGATCGCAAATAATCACTGGTCCAAACATGGGTGGTAAAAGTTGCTACATCCGTCAAGTTGCTCTAATCACAATCATGTCCCAGgttc--gcaactatctttatttcttttca--ctccgtatgttttgttatcgtgcag--------------------------------------------
    |  ||    ||||| |  ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || || || |||||| | |||||    |   ||  | ||||     |  |   |      |   |   ||  | |||                                            
ACAAGCAGACAAGGAACGGTGTCAAATCATCACTGGGCCAAACATGGGTGGTAAAAGTTGCTACATCCGTCAAGTTGCCCTGATTACCATCATGGCTCAGgtaaaggtcgcttaccttatacgaatagaactttaaggagaacttggataattcagcatagcatacccggctatgttattggaatatacggcagcttgga