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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAATTTGGAATGGGACCAAGAGGCTCTGCTCTTATTTGTGGCTATACGATTCATCACAGAAGACTTGAATCGGCTATAGCATCGCTTAAAAACACAGAGgttcgtttctttctttttttctgctacaagctttttactttttttttcttcttctgtag

Basic information

species Selaginella moellendorffii
transcript EFJ17552
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17552 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GLYMA04G16260.2 (Glycine max), 5'ss of exon 3
CGAATTTGGAATGGGACCAAGAGGCTCTGCTCTTATTTGTGGCTATACGATTCATCACAGAAGACTTGAATCGGCTATAGCATCGCTTAAAAACACAGAGgtt-cgtttctttctttttttctgctacaagctttttactttttttttct----tcttctgtag------------------------------------
 |||  ||| |||||||||||||| ||||||||||||||||| ||||| | | |||| ||   | | || |||    | |||    | ||||| | ||||||  |   |   |   |    ||  |  ||   ||    |||   | ||     |  | |||||                                    
AGAACATGGTATGGGACCAAGAGGTTCTGCTCTTATTTGTGGATATACCAATTATCATAGGCTATTGGAGTCGAGCCTGGCAGATTTGAAAAAGAAAGAGgtaacaactggcttgctagaactatttaaactgttccggtttggctatcagttattctttgtagcctaaccagagaataattaattgatggctatgatca

upper sequence: EFJ17552 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GLYMA06G47430.1 (Glycine max), 5'ss of exon 3
CGAATTTGGAATGGGACCAAGAGGCTCTGCTCTTATTTGTGGCTATACGATTCATCACAGAAGACTTGAATCGGCTATAGCATCGCTTAAAAACACAGAGgtt-cgtttctttctttttttctgctacaagctttttactt--tttttttcttcttctgtag--------------------------------------
 |||  ||| ||||||||||| || ||||||||||||||||| ||||| | | |||| ||   |||||| ||     | |||    | ||||| | ||||||  |   |   |        || ||  || | ||  | ||  ||| ||  |||| || ||                                       
AGAACATGGTATGGGACCAAGGGGTTCTGCTCTTATTTGTGGATATACCAATTATCATAGGTTACTTGAGTCAAGCCTGGCAGATTTGAAAAAGAAAGAGgtaacagctggcttgcaagaactacttaaacccttcgagtttgtttattcgttctactttatatcctaactgaagaataattagccgatggctatgatca