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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTTCAAGGCTAAAGGAAAATGTTGAGGAAGAAGAAACGCTGCAGTTTATGGTCAACGTCATTCAGCCTCAGTTTAATCTTCACTCAGAAGACGCACATgtgagtttcattcttatagatggatcagaaatttatctttgcttttactgtgcttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ17499
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17499 (Selaginella moellendorffii), 5'ss of exon 11
lower sequence: GLYMA02G38000.1 (Glycine max), 5'ss of exon 9
ACGTTCAAGGCTA-AAGGAAAATGTTGAGGAAGAAGAAACGCTGCAGTTTATGGTCAACGTCATTCAGCCTCAGTTTAATCTTCACTCAGAAGACGCACATgtgagtt----------------tcattcttatagatgga----------tcagaaatttatctttgcttttactgtgcttgcag---------------
    | ||    | || |   | |     || || |  |  |  || || ||||| ||  | ||| | ||||||||||||||||||||||| |||||| |||| ||||                |  |  || || || ||          | ||| |   | | ||    ||| ||||| |||                 
---CTAAAAATGAGAATGCTGACGACACTGAGGAGGGGATTCGACACTTCATGGTTAATATTATTGAACCTCAGTTTAATCTTCACTCAGAGGACGCAAATgtaagttatagaatactttttttttttcattttaaatagagcttatgggctgagacacagagcattttaattattgtgcatgccttttatatggtaactt

upper sequence: EFJ17499 (Selaginella moellendorffii), 5'ss of exon 11
lower sequence: AT1G58250.1 (Arabidopsis thaliana), 5'ss of exon 11
--ACGTTCAAGGCTAAAGGAAAATGTTGAGGAAGAAGAAACGCTGCAGTTTATGGTCAACGTCATTCAGCCTCAGTTTAATCTTCACTCAGAAGACGCACATgtgagtt-tcatt----cttatagatgga--tcagaaatttatctttgctttta--ctgtgcttgcag--------------------------------
  ||  |  || | |  | |      |||||||||||  || |  || || ||||| || |||||| |||| ||||||||||||||||||||||| ||  |||| |||  | |||    | ||   ||| |  |   | |  |||   |  |||||    ||| |  ||                                 
GTACAGTTGAGACCATTGAAT----CTGAGGAAGAAGGGACTCGTCACTTCATGGTGAATGTCATTGAGCCACAGTTTAATCTTCACTCAGAAGAAGCTAATgtaagtaattattgccgcgtaagaatgcacgtttaacacctattacttattttagagcgtggtaacactataagtcttggctgaataagtttaccttact

upper sequence: EFJ17499 (Selaginella moellendorffii), 5'ss of exon 11
lower sequence: AT1G58250.2 (Arabidopsis thaliana), 5'ss of exon 11
--ACGTTCAAGGCTAAAGGAAAATGTTGAGGAAGAAGAAACGCTGCAGTTTATGGTCAACGTCATTCAGCCTCAGTTTAATCTTCACTCAGAAGACGCACATgtgagtt-tcatt----cttatagatgga--tcagaaatttatctttgcttttac--tgtgcttgcag------------------------------------------------
  ||  |  || | |  | |      |||||||||||  || |  || || ||||| || |||||| |||| ||||||||||||||||||||||| ||  |||| |||  | |||    | ||   ||| |  |   | |  |||   |  |||||    ||| |  ||                                                 
GTACAGTTGAGACCATTGAAT----CTGAGGAAGAAGGGACTCGTCACTTCATGGTGAATGTCATTGAGCCACAGTTTAATCTTCACTCAGAAGAAGCTAATgtaagtaattattgccgcgtaagaatgcacgtttaacacctattacttattttagagcgtggtaacactataagtcttggctgaataagtttaccttacttgcattcaaactttag