1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaacactccttgtcaatcgattgcctcgactgattcatgctctctttcgcagCTGTATGGTGGCCTTCTACTCGTCGTTGGCTACGTGATCTTCGACACACAACTTATCATCGAGAGAGCTGAGAGGGGTGACATGGATCACATCAAACACG
species | Selaginella moellendorffii |
transcript | EFJ17491 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACGTCCTCTCGAGCTTCTTTGGTGGAGCCGCTCTCATGTTCGAAGTAGAG CTGTATGGTGGCCTTCTACTCGTCGTTGGCTACGTGATCTTCGACACACAAEST: gi|169059745|gb|FE468316.1|FE468316
genomic: ACGTCCTCTCGAGCTTCTTTGGTGGAGCCGCTCTCATGTTCGAAGTAGAGgtaaacactc ... tctttcgcagCTGTATGGTGGCCTTCTACTCGTCGTTGGCTACGTGATCTTCGACACACAA
EST: ACGTCCTCTCGAGCTTCTTTGGTGGAGCCGCTCTCATGTTCGAAGTAGAG CTGTATGGTGGCCTTCTACTCGTCGTTGGCTACGTGATCTTCGACACACAA
genomic: ACGTCCTCTCGAGCTTCTTTGGTGGAGCCGCTCTCATGTTCGAAGTAGAGgtaaacactc ... tctttcgcagCTGTATGGTGGCCTTCTACTCGTCGTTGGCTACGTGATCTTCGACACACAA
gtaaacactccttgtcaatcgattgcctcgactgattcatgctctctttcgcagCTGTATGGTGGCCTTCTACTCGTCGTTGGCTACGTGATCTTCGACACACAACTTATCATCGAGAGAGCTGAGAGGGGTGACATGGATCACATCAAACACG
gactgat putative branch site (score: 35)
ttcatgctctctttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacactccttgtcaatcgattgcctcgactgattcatgctctctttcgcagCTGTATGGTGGCCTTCTACTCGTCGTTGGCTACGTGATCTTCGACACACAACTTATCATCGAGAGAGCTGAGAGGGGTGACATGGATCACATCAAACACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA