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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAGCTACTCCTACTGCTGTTATGGTCGCCACTGGAAAAGGTGCAGCCCAAGGTGTTCTAATCAAAGGTGGCAATGCATTAGAGAGTGCACAGAAGGTGgttattcacagacattctttcttctttcgagggaataactgaaaccacaggctagtaattcacattgctgggttttcttctttgtttttcctcttgcttcttctttttacgttttctttttctctctgcactttgcttgaaattaagactaatacttgtttgtgatgcttcag

Basic information

species Selaginella moellendorffii
transcript EFJ17461
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17461 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: LOC_Os02g10290.1 (Oryza sativa), 5'ss of exon 6
---CTTAGCTACTCCTACTGCTGTTATGGTCGCCACTGGAAAAGGTGCAGCCCAAGGTGTTCTAATCAAAGGTGGCAATGCATTAGAGAGTGCACAGAAGGTGgttattcacagacattctttcttctttcgagggaataactgaaaccacaggctagtaattcacattgctgggttttcttctttgtttttcctcttgcttcttctttttacgttttctttttctctctgcactttgcttgaaattaagactaatacttgtttgtgatgcttcag
     | ||||| || |||||||||||||| |||||||||||||||||  | ||||||||||| || || |||||||||||| | ||||  || || |||||   |       || ||  |||||                   |   ||     || |  ||| ||   |     | |  | ||| ||||   |  ||   ||    | | | || | ||| | | | ||||                                           
TGGACTGGCTACCCCGACTGCTGTTATGGTTGCCACTGGAAAAGGTGCTTCTCAAGGTGTTCTTATTAAGGGTGGCAATGCACTTGAGAAAGCTCACAAGgtaact-------gagatgatttct-------------------atgtcatgtattattttttctcacatcaaatgtattctattttttttatattgtgacactaaactattccttgtatttctttatgtgcag------------------------------------------

upper sequence: EFJ17461 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GRMZM2G029951_T01 (Zea mays), 5'ss of exon 5
---CTTAGCTACTCCTACTGCTGTTATGGTCGCCACTGGAAAAGGTGCAGCCCAAGGTGTTCTAATCAAAGGTGGCAATGCATTAGAGAGTGCACAGAAGGTGgttattcacagacattctttcttctttcgagggaataactgaaaccacaggctagtaattcacattg-ctgggttttcttctttgtttttcctcttgcttcttctttttacgttttctttttctctctgcactttgcttgaaattaagactaatacttgtttgtgatgcttcag
     | ||||| || |||||||||||||| || ||||| ||||||||  | ||||||||||| || || ||||| |||||| | ||||  || || |||||   | |    ||||||  |||||| |   || |   | |  |  || |     |  |  |||| ||   |||   | ||    |||   | |        | |   |||||  |  | | | ||  | ||||                                           
GGGACTTGCTACACCAACTGCTGTTATGGTTGCAACTGGTAAAGGTGCTTCTCAAGGTGTTCTCATTAAGGGTGGAAATGCACTTGAGAAAGCTCATAAGgtaaatct----agacatgatttcttttccagaagattttagggccacaagtacattatttttcaaatgaactgtactgtccaaattggcatacgaaactaatgtctcttttatttcatatatatccttttgcag------------------------------------------

upper sequence: EFJ17461 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA01G42790.1 (Glycine max), 5'ss of exon 3
---CTTAGCTACTCCTACTGCTGTTATGGTCGCCACTGGAAAAGGTGCAGCCCAAGGTGTTCTAATCAAAGGTGGCAATGCATTAGAGAGTGCACAGAAGGTGgttattcacagacattctttcttctttcgagggaataactgaaaccacaggctag--taattcacattgctgggttttcttctttgtttttcctcttgcttcttctttttacgttttctttttctctctgcactttgcttgaaattaagactaatacttgtttgtgatgcttcag
    ||||| ||||| |||||||||||||| |  || |||   |||||| | || ||||| || |||||||| ||| | ||||||||||||||||| |||||    |||  ||       ||||   |||   |  |   |||  ||     |  | |  || |  |  ||| |||| ||  |  |      ||  |   | | |                                                                         
GGGTTTAGCGACTCCAACTGCTGTTATGGTTGGGACCGGAGTTGGTGCATCTCAGGGTGTGCTCATCAAAGGAGGCCAAGCATTAGAGAGTGCACATAAGgtcagcatttgca-------tttcacattt---gttagccacttgaattttggatttgcttagtctatgttggtgggcttaatattgaacggttaataaagttgcaagaa--------------------------------------------------------------------