1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtactggtattctttctgttttctaaagtctcttgctgctttgctggcttgcagTCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACGCCAAACAGATGCTCGAGCTGATCCGAAAGGCTTCCATGGATTCGTGCGA
species | Selaginella moellendorffii |
transcript | EFJ14900 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATACCTGTTGTTCCAATCGACGTTGCTGAAACCTTGCACTTAAAATCAG TCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACGEST: gi|169057994|gb|FE463928.1|FE463928
genomic: AATACCTGTTGTTCCAATCGACGTTGCTGAAACCTTGCACTTAAAATCAGgtactggtat ... tggcttgcagTCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACG
EST: AATACCTGTTGTTCCAATCGACGTTGCTGAAACCTTGCACTTAAAATCAG TCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACGEST: gi|169056205|gb|FE464067.1|FE464067
genomic: AATACCTGTTGTTCCAATCGACGTTGCTGAAACCTTGCACTTAAAATCAGgtactggtat ... tggcttgcagTCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACG
EST: AATACCTGTTGTTCCAATCGACGTTGCTGAAACCTTGCACTTAAAATCAG TCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACGEST: gi|169042399|gb|FE452908.1|FE452908
genomic: AATACCTGTTGTTCCAATCGACGTTGCTGAAACCTTGCACTTAAAATCAGgtactggtat ... tggcttgcagTCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACG
EST: AATACCTGTTGTTCCAATCGACGTTGCTGAAACCTTGCACTTAAAATCAG TCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACGEST: gi|169105622|gb|FE506945.1|FE506945
genomic: AATACCTGTTGTTCCAATCGACGTTGCTGAAACCTTGCACTTAAAATCAGgtactggtat ... tggcttgcagTCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACG
EST: AATACCTGTTGTTCCAATCGACGTTGCTGAAACCTTGCACTTAAAATCAG TCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACGEST: gi|169042398|gb|FE452907.1|FE452907
genomic: AATACCTGTTGTTCCAATCGACGTTGCTGAAACCTTGCACTTAAAATCAGgtactggtat ... tggcttgcagTCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACG
EST: AATACCTGTTGTTCCAATCGACGTTGCTGAAACCTTGCACTTAAAATCAG TCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACGEST: gi|169056219|gb|FE464068.1|FE464068
genomic: AATACCTGTTGTTCCAATCGACGTTGCTGAAACCTTGCACTTAAAATCAGgtactggtat ... tggcttgcagTCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACG
EST: AATACCTGTTGTTCCAATCGACGTTGCTGAAACCTTGCACTTAAAATCAG TCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCG
genomic: AATACCTGTTGTTCCAATCGACGTTGCTGAAACCTTGCACTTAAAATCAGgtactggtat ... tggcttgcagTCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCG
gtactggtattctttctgttttctaaagtctcttgctgctttgctggcttgcagTCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACGCCAAACAGATGCTCGAGCTGATCCGAAAGGCTTCCATGGATTCGTGCGA
ttctaaa putative branch site (score: 3)
ctttgct putative PPT
ttttctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactggtattctttctgttttctaaagtctcttgctgctttgctggcttgcagTCTTGTCTCCGCTTGGCCGGAACTCTTTTCTGGCCGAGGAGACCTTCCACGCCAAACAGATGCTCGAGCTGATCCGAAAGGCTTCCATGGATTCGTGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA