1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgatctttgttttcgtctttgaatcggcttgaatatatttgctccagGTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATTCCTCCTGGAAGCACTGGTCTTGATCCATCGCAGACATCTTTCTTCCAG
species | Selaginella moellendorffii |
transcript | EFJ14871 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTACCAAGGGCGATCTCAAAGAAGTTCGTGAGGAAGTCGCCAAGTACAAG GTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATTEST: gi|169112324|gb|FE512705.1|FE512705
genomic: TTACCAAGGGCGATCTCAAAGAAGTTCGTGAGGAAGTCGCCAAGTACAAGgtatgatctt ... tttgctccagGTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATT
EST: TTACCAAGGGCGATCTCAAAGAAGTTCGTGAGGAAGTCTCCAAGTACAAG GTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATTEST: gi|169062351|gb|FE470541.1|FE470541
genomic: TTACCAAGGGCGATCTCAAAGAAGTTCGTGAGGAAGTCGCCAAGTACAAGgtatgatctt ... tttgctccagGTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATT
EST: TTACCAAGGGCGATCTCAAAGAAGTTCGTGAGGAAGTCGCCAAGTACAAG GTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATTEST: gi|169045723|gb|FE451696.1|FE451696
genomic: TTACCAAGGGCGATCTCAAAGAAGTTCGTGAGGAAGTCGCCAAGTACAAGgtatgatctt ... tttgctccagGTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATT
EST: TTACCAAGGGCGATCTCAAAGAAGTTCGTGAGGAAGTCGCCAAGTACAAG GTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATTEST: gi|169066797|gb|FE473629.1|FE473629
genomic: TTACCAAGGGCGATCTCAAAGAAGTTCGTGAGGAAGTCGCCAAGTACAAGgtatgatctt ... tttgctccagGTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATT
EST: TTACCAAGGGCGATCTCAAAGAAGTTCGTGAGGAAGTCGCCAAGTACAAG GTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATT
genomic: TTACCAAGGGCGATCTCAAAGAAGTTCGTGAGGAAGTCGCCAAGTACAAGgtatgatctt ... tttgctccagGTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATT
gtatgatctttgttttcgtctttgaatcggcttgaatatatttgctccagGTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATTCCTCCTGGAAGCACTGGTCTTGATCCATCGCAGACATCTTTCTTCCAG
tttgctcc CT-rich tract
ttgaatatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatctttgttttcgtctttgaatcggcttgaatatatttgctccagGTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATTCCTCCTGGAAGCACTGGTCTTGATCCATCGCAGACATCTTTCTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG