1 5' 3' | 2 5' 3' | 3 5' 3' |
TCTTCGTTCCTTCGGAGGAGACTGTGCTCGACTGGGGCGATTCTGTTTATCATTTTCTTCCTCCCATAAGAAATTGGCCAAGCAATCCTCCAGAGTACAGgtaacattcttgagaactttcagcgtcgttctgaattccactctatag
species | Selaginella moellendorffii |
transcript | EFJ13539 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATTTTCTTCCTCCCATAAGAAATTGGCCAAGCAATCCTCCAGAGTACAG GAAAGTCGTGGAAGAGTACGGCCAGGAGATACGGCCTCTGGCAATCAAACTEST: gi|169059531|gb|FE468557.1|FE468557
genomic: CATTTTCTTCCTCCCATAAGAAATTGGCCAAGCAATCCTCCAGAGTACAGgtaacattct ... cactctatagGAAAGTCGTGGAAGAGTACGGCCAGGAGATACGGCCTCTGGCAATCAAACT
EST: CATTTTCTTCCTCCCATAAGAAATTGGCCAAGCAATCCTCCAGAGTACAG GAAAGTCGTGGAAGAGTACGGCCAGGAGATACGGCCTCTGGCAATCAAACTEST: gi|169113254|gb|FE515514.1|FE515514
genomic: CATTTTCTTCCTCCCATAAGAAATTGGCCAAGCAATCCTCCAGAGTACAGgtaacattct ... cactctatagGAAAGTCGTGGAAGAGTACGGCCAGGAGATACGGCCTCTGGCAATCAAACT
EST: CATTTTCTTCCTCCCATAAGAAATTGGCCAAGCAATCCTCCAGAGTAC-- ---AGTCGTGGAAGAGTACGGCCAGGAGATACGGCCTCTGGCAATCAAACT
genomic: CATTTTCTTCCTCCCATAAGAAATTGGCCAAGCAATCCTCCAGAGTACAGgtaacattct ... cactctatagGAAAGTCGTGGAAGAGTACGGCCAGGAGATACGGCCTCTGGCAATCAAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCGTTCCTTCGGAGGAGACTGTGCTCGACTGGGGCGATTCTGTTTATCATTTTCTTCCTCCCATAAGAAATTGGCCAAGCAATCCTCCAGAGTACAGgtaacattcttgagaactttcagcgtcgttctgaattccactctatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA