1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTGCTCTCAAGTTCGAGCATAGGAGCAGCAAAGGTTGCAACTACGGGCCTCCTTACGAATGGCAGGTTTACGAgtgagtagttctaccatgagtcttttctctatagtttctaagttttggttgatag
species | Selaginella moellendorffii |
transcript | EFJ13521 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCAGCAAAGGTTGCAACTATGGGCCTCCTTACGAATGGCAGGTTTACGA CAACCTTGGAGGAAAACACGGGATACCAAAGGTGCACTTCAAAGGTCGCCAEST: gi|169070416|gb|FE476781.1|FE476781
genomic: AGCAGCAAAGGTTGCAACTACGGGCCTCCTTACGAATGGCAGGTTTACGAgtgagtagtt ... tggttgatagCAACCTTGGAGGAAAACACGGGATACCAAAGGTGCACTTCAAAGGTCGCCA
EST: AGCAGCAAAGGTTGCAACTATGGGCCTCCTTACGAATGGCAGGTTTACGA CAACCTTGGAGGAAAACACGGGATACCAAAGGTGCACTTCAAAGGTCGCCAEST: gi|169047461|gb|FE455656.1|FE455656
genomic: AGCAGCAAAGGTTGCAACTACGGGCCTCCTTACGAATGGCAGGTTTACGAgtgagtagtt ... tggttgatagCAACCTTGGAGGAAAACACGGGATACCAAAGGTGCACTTCAAAGGTCGCCA
EST: CAGGTTTACGA CAACCTTGGAGGAAAACACGGGATACCAAAGGTGCACTTCAAAGGTCGCCAEST: gi|169071027|gb|FE476352.1|FE476352
genomic: CAGGTTTACGAgtgagtagtt ... tggttgatagCAACCTTGGAGGAAAACACGGGATACCAAAGGTGCACTTCAAAGGTCGCCA
EST: AGCAGCAAAGGTTGCAACTATGGGCCTCCTTACGAATGGCAGGTTTACGA CAACCTTGGAGGAAAACACGGGATACCAAAGGTGCACTTCAAAGGTCGCCAEST: gi|169055838|gb|FE465079.1|FE465079
genomic: AGCAGCAAAGGTTGCAACTACGGGCCTCCTTACGAATGGCAGGTTTACGAgtgagtagtt ... tggttgatagCAACCTTGGAGGAAAACACGGGATACCAAAGGTGCACTTCAAAGGTCGCCA
EST: AGCAGCAAAGGTTGCAACTATGGGCCTCCTTACGAATGGCAGGTTTACGA CAACCTTGGAGGAAAACACGGGATACCAAAGGTGCACTTCAAAGGTCGCCAEST: gi|169034150|gb|FE444275.1|FE444275
genomic: AGCAGCAAAGGTTGCAACTACGGGCCTCCTTACGAATGGCAGGTTTACGAgtgagtagtt ... tggttgatagCAACCTTGGAGGAAAACACGGGATACCAAAGGTGCACTTCAAAGGTCGCCA
EST: AGCAGCAAAGGTTGCAACTATGGGCCTCCTTACGAATGGCAGGTTTACGA CAACCTTGGAGGAAAACACGGGATACCAAAGGTGCACTTCAAAGGTCGCCA
genomic: AGCAGCAAAGGTTGCAACTACGGGCCTCCTTACGAATGGCAGGTTTACGAgtgagtagtt ... tggttgatagCAACCTTGGAGGAAAACACGGGATACCAAAGGTGCACTTCAAAGGTCGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCTCTCAAGTTCGAGCATAGGAGCAGCAAAGGTTGCAACTACGGGCCTCCTTACGAATGGCAGGTTTACGAgtgagtagttctaccatgagtcttttctctatagtttctaagttttggttgatag
- - - - - - - - - - - - - - GCAAAG