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U12 introns
microRNA genes
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Data associated with selected splice site
General
RNA-Seq
Sequence
atgc
intronic sequence
ATGC
exonic sequence
GATGG
gtatgcatacattcggacactagtgtctctctgatgaggtgaattctgtgcag
Basic information
species
Selaginella moellendorffii
transcript
EFJ13160
intron #
6
splice site
5'
intron type
U2
RNA-Seq data
ATGC
Supported by RNA-Seq exonic block that spans over the splice site
atgs
Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes
:
21
(upstream exon),
20
(downstream exon)
Score
:
2
GATGG
gtatgcatac
...
ttctgtgcag
CTATTGCACAGAAGCGAGAT
TAAATGGTACCACCCTGAGAGGGAAGTATGTCCTTTGCCTTGCTTCCAGCGCGGAGCTTCCCGTGGACCTAGATGCTATC
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